JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:15 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1ei5a1.name2015-04-17 17:10 0 Job name flag file
[ ]jp_geybnsb.align2015-04-17 18:15 4.6KPSIBLAST alignment in FASTA format
[TXT]jp_geybnsb.als2015-04-17 18:15 2.2KAlscript command file for PS/PDF output
[ ]jp_geybnsb.blast.gz2015-04-17 18:15 8.4KCompressed PSIBLAST output file
[TXT]jp_geybnsb.coils.csv2015-04-17 18:15 522 COILS output in CSV format
[ ]jp_geybnsb.coilseq.lupas_142015-04-17 18:15 3.4KCOILS output, window length 14
[ ]jp_geybnsb.coilseq.lupas_212015-04-17 18:15 3.4KCOILS output, window length 21
[ ]jp_geybnsb.coilseq.lupas_282015-04-17 18:15 3.4KCOILS output, window length 28
[ ]jp_geybnsb.concise2015-04-17 18:15 12KPrediction: coiled-coil, solvent, alignment
[ ]jp_geybnsb.concise.blc2015-04-17 18:15 5.8KBLC format prediction and alignment data
[ ]jp_geybnsb.concise.fasta2015-04-17 18:15 5.5KPrediction: coiled-coil, solvent, alignment
[ ]jp_geybnsb.concise.pdf2015-04-17 18:15 38KPDF prediction and alignment data
[ ]jp_geybnsb.concise.ps2015-04-17 18:15 640KPrediction: coiled-coil, solvent, alignment
[ ]jp_geybnsb.fasta2015-04-17 18:13 96 Input query sequence in FASTA format
[ ]jp_geybnsb.full_MSA.fasta2015-04-17 18:15 6.0KFull MSA before JPred filters in FASTA
[TXT]jp_geybnsb.full_MSA.fasta.noGaps.html2015-04-17 18:15 11KFull MSA before JPred filters in FASTA
[TXT]jp_geybnsb.full_MSA.fasta.withGaps.html2015-04-17 18:15 24KFull MSA before JPred filters in FASTA
[ ]jp_geybnsb.hmm2015-04-17 18:15 15KHHMer2 profile of the alignment
[TXT]jp_geybnsb.html2015-04-17 18:15 22KHTML prediction and alignment data
[ ]jp_geybnsb.input2015-04-17 17:10 89 Raw input data for analysis
[ ]jp_geybnsb.jalview2015-04-17 18:15 2.4KJalview annotation file for alignment
[ ]jp_geybnsb.jnet2015-04-17 18:15 3.1KJnet secondary structure output
[TXT]jp_geybnsb.profile2015-04-17 18:14 13KPSIBLAST profile from alignment
[ ]jp_geybnsb.pssm2015-04-17 18:15 18KPSIBLAST PSSM for Jnet
[TXT]jp_geybnsb.results.html2016-02-15 12:16 43KJPred results page
[TXT]jp_geybnsb.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_geybnsb.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_geybnsb.seq2015-04-17 17:10 96 Sequence data file
[TXT]jp_geybnsb.simple.html2015-04-17 18:15 1.2KBrief HTML: sequence and prediction only
[TXT]jp_geybnsb.svg.html2015-04-17 18:15 34KJalview SVG summary of results
[ ]jp_geybnsb.tar.gz2015-04-17 18:15 85KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.