JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:23 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1ei7a_.name2015-04-17 15:19 0 Job name flag file
[ ]jp_ZZlAt30.align2015-04-17 15:23 5.6KPSIBLAST alignment in FASTA format
[TXT]jp_ZZlAt30.als2015-04-17 15:23 2.6KAlscript command file for PS/PDF output
[ ]jp_ZZlAt30.blast.gz2015-04-17 15:23 12KCompressed PSIBLAST output file
[TXT]jp_ZZlAt30.coils.csv2015-04-17 15:23 1.0KCOILS output in CSV format
[ ]jp_ZZlAt30.coilseq.lupas_142015-04-17 15:23 6.6KCOILS output, window length 14
[ ]jp_ZZlAt30.coilseq.lupas_212015-04-17 15:23 6.6KCOILS output, window length 21
[ ]jp_ZZlAt30.coilseq.lupas_282015-04-17 15:23 6.6KCOILS output, window length 28
[ ]jp_ZZlAt30.concise2015-04-17 15:23 17KPrediction: coiled-coil, solvent, alignment
[ ]jp_ZZlAt30.concise.blc2015-04-17 15:23 7.9KBLC format prediction and alignment data
[ ]jp_ZZlAt30.concise.fasta2015-04-17 15:23 7.2KPrediction: coiled-coil, solvent, alignment
[ ]jp_ZZlAt30.concise.pdf2015-04-17 15:23 51KPDF prediction and alignment data
[ ]jp_ZZlAt30.concise.ps2015-04-17 15:23 939KPrediction: coiled-coil, solvent, alignment
[ ]jp_ZZlAt30.fasta2015-04-17 15:19 173 Input query sequence in FASTA format
[ ]jp_ZZlAt30.full_MSA.fasta2015-04-17 15:23 12KFull MSA before JPred filters in FASTA
[TXT]jp_ZZlAt30.full_MSA.fasta.noGaps.html2015-04-17 15:23 15KFull MSA before JPred filters in FASTA
[TXT]jp_ZZlAt30.full_MSA.fasta.withGaps.html2015-04-17 15:23 36KFull MSA before JPred filters in FASTA
[ ]jp_ZZlAt30.hmm2015-04-17 15:23 30KHHMer2 profile of the alignment
[TXT]jp_ZZlAt30.html2015-04-17 15:23 27KHTML prediction and alignment data
[ ]jp_ZZlAt30.input2015-04-17 15:19 165 Raw input data for analysis
[ ]jp_ZZlAt30.jalview2015-04-17 15:23 4.0KJalview annotation file for alignment
[ ]jp_ZZlAt30.jnet2015-04-17 15:23 5.8KJnet secondary structure output
[TXT]jp_ZZlAt30.profile2015-04-17 15:21 26KPSIBLAST profile from alignment
[ ]jp_ZZlAt30.pssm2015-04-17 15:23 34KPSIBLAST PSSM for Jnet
[TXT]jp_ZZlAt30.results.html2016-02-15 12:16 72KJPred results page
[TXT]jp_ZZlAt30.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_ZZlAt30.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_ZZlAt30.seq2015-04-17 15:19 173 Sequence data file
[TXT]jp_ZZlAt30.simple.html2015-04-17 15:23 1.4KBrief HTML: sequence and prediction only
[TXT]jp_ZZlAt30.svg.html2015-04-17 15:23 64KJalview SVG summary of results
[ ]jp_ZZlAt30.tar.gz2015-04-17 15:23 114KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.