JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:18 4.7KJPred server log file
[TXT]README2016-02-15 12:16 2.1KResults file descriptions
[TXT]d1f0la1.name2015-04-17 17:10 0 Job name flag file
[ ]jp_EuiaUqD.align2015-04-17 18:18 340 PSIBLAST alignment in FASTA format
[TXT]jp_EuiaUqD.als2015-04-17 18:18 3.2KAlscript command file for PS/PDF output
[ ]jp_EuiaUqD.blast.gz2015-04-17 18:18 1.9KCompressed PSIBLAST output file
[TXT]jp_EuiaUqD.coils.csv2015-04-17 18:18 960 COILS output in CSV format
[ ]jp_EuiaUqD.coilseq.lupas_142015-04-17 18:18 6.5KCOILS output, window length 14
[ ]jp_EuiaUqD.coilseq.lupas_212015-04-17 18:18 6.5KCOILS output, window length 21
[ ]jp_EuiaUqD.coilseq.lupas_282015-04-17 18:18 6.5KCOILS output, window length 28
[ ]jp_EuiaUqD.concise2015-04-17 18:18 7.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_EuiaUqD.concise.blc2015-04-17 18:18 2.7KBLC format prediction and alignment data
[ ]jp_EuiaUqD.concise.fasta2015-04-17 18:18 2.0KPrediction: coiled-coil, solvent, alignment
[ ]jp_EuiaUqD.concise.pdf2015-04-17 18:18 17KPDF prediction and alignment data
[ ]jp_EuiaUqD.concise.ps2015-04-17 18:18 292KPrediction: coiled-coil, solvent, alignment
[ ]jp_EuiaUqD.fasta2015-04-17 18:13 170 Input query sequence in FASTA format
[ ]jp_EuiaUqD.full_MSA.fasta2015-04-17 18:18 698 Full MSA before JPred filters in FASTA
[TXT]jp_EuiaUqD.full_MSA.fasta.noGaps.html2015-04-17 18:18 1.1KFull MSA before JPred filters in FASTA
[TXT]jp_EuiaUqD.full_MSA.fasta.withGaps.html2015-04-17 18:18 1.3KFull MSA before JPred filters in FASTA
[ ]jp_EuiaUqD.hmm2015-04-17 18:18 29KHHMer2 profile of the alignment
[TXT]jp_EuiaUqD.html2015-04-17 18:18 15KHTML prediction and alignment data
[ ]jp_EuiaUqD.input2015-04-17 17:10 162 Raw input data for analysis
[ ]jp_EuiaUqD.jalview2015-04-17 18:18 3.9KJalview annotation file for alignment
[ ]jp_EuiaUqD.jnet2015-04-17 18:18 5.7KJnet secondary structure output
[TXT]jp_EuiaUqD.profile2015-04-17 18:15 25KPSIBLAST profile from alignment
[ ]jp_EuiaUqD.pssm2015-04-17 18:18 33KPSIBLAST PSSM for Jnet
[TXT]jp_EuiaUqD.results.html2016-02-15 12:16 73KJPred results page
[TXT]jp_EuiaUqD.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_EuiaUqD.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_EuiaUqD.seq2015-04-17 17:10 170 Sequence data file
[TXT]jp_EuiaUqD.simple.html2015-04-17 18:18 1.6KBrief HTML: sequence and prediction only
[TXT]jp_EuiaUqD.svg.html2015-04-17 18:18 64KJalview SVG summary of results
[ ]jp_EuiaUqD.tar.gz2015-04-17 18:18 49KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.