JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:23 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1g2ra_.name2015-04-17 15:57 0 Job name flag file
[ ]jp_RdO2fRC.align2015-04-17 16:22 146KPSIBLAST alignment in FASTA format
[TXT]jp_RdO2fRC.als2015-04-17 16:22 2.3KAlscript command file for PS/PDF output
[ ]jp_RdO2fRC.blast.gz2015-04-17 16:20 503KCompressed PSIBLAST output file
[TXT]jp_RdO2fRC.coils.csv2015-04-17 16:22 594 COILS output in CSV format
[ ]jp_RdO2fRC.coilseq.lupas_142015-04-17 16:22 3.9KCOILS output, window length 14
[ ]jp_RdO2fRC.coilseq.lupas_212015-04-17 16:22 3.9KCOILS output, window length 21
[ ]jp_RdO2fRC.coilseq.lupas_282015-04-17 16:22 3.9KCOILS output, window length 28
[ ]jp_RdO2fRC.concise2015-04-17 16:22 279KPrediction: coiled-coil, solvent, alignment
[ ]jp_RdO2fRC.concise.blc2015-04-17 16:22 145KBLC format prediction and alignment data
[ ]jp_RdO2fRC.concise.fasta2015-04-17 16:22 147KPrediction: coiled-coil, solvent, alignment
[ ]jp_RdO2fRC.concise.pdf2015-04-17 16:22 883KPDF prediction and alignment data
[ ]jp_RdO2fRC.concise.ps2015-04-17 16:22 16MPrediction: coiled-coil, solvent, alignment
[ ]jp_RdO2fRC.fasta2015-04-17 16:15 108 Input query sequence in FASTA format
[ ]jp_RdO2fRC.full_MSA.fasta2015-04-17 16:20 891KFull MSA before JPred filters in FASTA
[TXT]jp_RdO2fRC.full_MSA.fasta.noGaps.html2015-04-17 16:22 410KFull MSA before JPred filters in FASTA
[TXT]jp_RdO2fRC.full_MSA.fasta.withGaps.html2015-04-17 16:22 3.9MFull MSA before JPred filters in FASTA
[ ]jp_RdO2fRC.hmm2015-04-17 16:22 18KHHMer2 profile of the alignment
[TXT]jp_RdO2fRC.html2015-04-17 16:22 406KHTML prediction and alignment data
[ ]jp_RdO2fRC.input2015-04-17 15:57 101 Raw input data for analysis
[ ]jp_RdO2fRC.jalview2015-04-17 16:22 2.7KJalview annotation file for alignment
[ ]jp_RdO2fRC.jnet2015-04-17 16:22 3.5KJnet secondary structure output
[TXT]jp_RdO2fRC.profile2015-04-17 16:18 15KPSIBLAST profile from alignment
[ ]jp_RdO2fRC.pssm2015-04-17 16:22 20KPSIBLAST PSSM for Jnet
[TXT]jp_RdO2fRC.results.html2016-02-15 12:17 48KJPred results page
[TXT]jp_RdO2fRC.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_RdO2fRC.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_RdO2fRC.seq2015-04-17 15:57 108 Sequence data file
[TXT]jp_RdO2fRC.simple.html2015-04-17 16:22 1.2KBrief HTML: sequence and prediction only
[TXT]jp_RdO2fRC.svg.html2015-04-17 16:23 40KJalview SVG summary of results
[ ]jp_RdO2fRC.tar.gz2015-04-17 16:23 1.9MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.