JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:28 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1g2ya_.name2015-04-17 15:19 0 Job name flag file
[ ]jp_MBxOqry.align2015-04-17 16:28 543 PSIBLAST alignment in FASTA format
[TXT]jp_MBxOqry.als2015-04-17 16:28 1.4KAlscript command file for PS/PDF output
[ ]jp_MBxOqry.blast.gz2015-04-17 16:28 5.0KCompressed PSIBLAST output file
[TXT]jp_MBxOqry.coils.csv2015-04-17 16:28 216 COILS output in CSV format
[ ]jp_MBxOqry.coilseq.lupas_142015-04-17 16:28 1.3KCOILS output, window length 14
[ ]jp_MBxOqry.coilseq.lupas_212015-04-17 16:28 1.3KCOILS output, window length 21
[ ]jp_MBxOqry.coilseq.lupas_282015-04-17 16:28 1.3KCOILS output, window length 28
[ ]jp_MBxOqry.concise2015-04-17 16:28 2.4KPrediction: coiled-coil, solvent, alignment
[ ]jp_MBxOqry.concise.blc2015-04-17 16:28 1.1KBLC format prediction and alignment data
[ ]jp_MBxOqry.concise.fasta2015-04-17 16:28 963 Prediction: coiled-coil, solvent, alignment
[ ]jp_MBxOqry.concise.pdf2015-04-17 16:28 8.3KPDF prediction and alignment data
[ ]jp_MBxOqry.concise.ps2015-04-17 16:28 108KPrediction: coiled-coil, solvent, alignment
[ ]jp_MBxOqry.fasta2015-04-17 15:19 44 Input query sequence in FASTA format
[ ]jp_MBxOqry.full_MSA.fasta2015-04-17 16:28 5.1KFull MSA before JPred filters in FASTA
[TXT]jp_MBxOqry.full_MSA.fasta.noGaps.html2015-04-17 16:28 16KFull MSA before JPred filters in FASTA
[TXT]jp_MBxOqry.full_MSA.fasta.withGaps.html2015-04-17 16:28 18KFull MSA before JPred filters in FASTA
[ ]jp_MBxOqry.hmm2015-04-17 16:28 5.8KHHMer2 profile of the alignment
[TXT]jp_MBxOqry.html2015-04-17 16:28 7.6KHTML prediction and alignment data
[ ]jp_MBxOqry.input2015-04-17 15:19 38 Raw input data for analysis
[ ]jp_MBxOqry.jalview2015-04-17 16:28 1.4KJalview annotation file for alignment
[ ]jp_MBxOqry.jnet2015-04-17 16:28 1.2KJnet secondary structure output
[TXT]jp_MBxOqry.profile2015-04-17 16:10 5.4KPSIBLAST profile from alignment
[ ]jp_MBxOqry.pssm2015-04-17 16:28 6.7KPSIBLAST PSSM for Jnet
[TXT]jp_MBxOqry.results.html2016-02-15 12:17 24KJPred results page
[TXT]jp_MBxOqry.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_MBxOqry.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_MBxOqry.seq2015-04-17 15:19 44 Sequence data file
[TXT]jp_MBxOqry.simple.html2015-04-17 16:28 972 Brief HTML: sequence and prediction only
[TXT]jp_MBxOqry.svg.html2015-04-17 16:28 15KJalview SVG summary of results
[ ]jp_MBxOqry.tar.gz2015-04-17 16:28 29KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.