JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:21 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1gd8a_.name2015-04-17 15:57 0 Job name flag file
[ ]jp_uEqdbRQ.align2015-04-17 16:20 83KPSIBLAST alignment in FASTA format
[TXT]jp_uEqdbRQ.als2015-04-17 16:20 2.2KAlscript command file for PS/PDF output
[ ]jp_uEqdbRQ.blast.gz2015-04-17 16:19 2.0MCompressed PSIBLAST output file
[TXT]jp_uEqdbRQ.coils.csv2015-04-17 16:20 660 COILS output in CSV format
[ ]jp_uEqdbRQ.coilseq.lupas_142015-04-17 16:20 4.4KCOILS output, window length 14
[ ]jp_uEqdbRQ.coilseq.lupas_212015-04-17 16:20 4.4KCOILS output, window length 21
[ ]jp_uEqdbRQ.coilseq.lupas_282015-04-17 16:20 4.4KCOILS output, window length 28
[ ]jp_uEqdbRQ.concise2015-04-17 16:20 162KPrediction: coiled-coil, solvent, alignment
[ ]jp_uEqdbRQ.concise.blc2015-04-17 16:20 84KBLC format prediction and alignment data
[ ]jp_uEqdbRQ.concise.fasta2015-04-17 16:20 84KPrediction: coiled-coil, solvent, alignment
[ ]jp_uEqdbRQ.concise.pdf2015-04-17 16:20 528KPDF prediction and alignment data
[ ]jp_uEqdbRQ.concise.ps2015-04-17 16:20 9.5MPrediction: coiled-coil, solvent, alignment
[ ]jp_uEqdbRQ.fasta2015-04-17 16:16 119 Input query sequence in FASTA format
[ ]jp_uEqdbRQ.full_MSA.fasta2015-04-17 16:19 4.9MFull MSA before JPred filters in FASTA
[TXT]jp_uEqdbRQ.full_MSA.fasta.noGaps.html2015-04-17 16:20 700KFull MSA before JPred filters in FASTA
[TXT]jp_uEqdbRQ.full_MSA.fasta.withGaps.html2015-04-17 16:20 10MFull MSA before JPred filters in FASTA
[ ]jp_uEqdbRQ.hmm2015-04-17 16:20 20KHHMer2 profile of the alignment
[TXT]jp_uEqdbRQ.html2015-04-17 16:20 227KHTML prediction and alignment data
[ ]jp_uEqdbRQ.input2015-04-17 15:57 112 Raw input data for analysis
[ ]jp_uEqdbRQ.jalview2015-04-17 16:20 3.0KJalview annotation file for alignment
[ ]jp_uEqdbRQ.jnet2015-04-17 16:20 3.9KJnet secondary structure output
[TXT]jp_uEqdbRQ.profile2015-04-17 16:18 17KPSIBLAST profile from alignment
[ ]jp_uEqdbRQ.pssm2015-04-17 16:20 23KPSIBLAST PSSM for Jnet
[TXT]jp_uEqdbRQ.results.html2016-02-15 12:17 52KJPred results page
[TXT]jp_uEqdbRQ.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_uEqdbRQ.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_uEqdbRQ.seq2015-04-17 15:57 119 Sequence data file
[TXT]jp_uEqdbRQ.simple.html2015-04-17 16:20 1.2KBrief HTML: sequence and prediction only
[TXT]jp_uEqdbRQ.svg.html2015-04-17 16:21 44KJalview SVG summary of results
[ ]jp_uEqdbRQ.tar.gz2015-04-17 16:21 3.4MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.