JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:20 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1go3e2.name2015-04-17 17:12 0 Job name flag file
[ ]jp_3MAL1fT.align2015-04-17 18:20 44KPSIBLAST alignment in FASTA format
[TXT]jp_3MAL1fT.als2015-04-17 18:20 2.0KAlscript command file for PS/PDF output
[ ]jp_3MAL1fT.blast.gz2015-04-17 18:19 219KCompressed PSIBLAST output file
[TXT]jp_3MAL1fT.coils.csv2015-04-17 18:20 498 COILS output in CSV format
[ ]jp_3MAL1fT.coilseq.lupas_142015-04-17 18:20 3.3KCOILS output, window length 14
[ ]jp_3MAL1fT.coilseq.lupas_212015-04-17 18:20 3.3KCOILS output, window length 21
[ ]jp_3MAL1fT.coilseq.lupas_282015-04-17 18:20 3.3KCOILS output, window length 28
[ ]jp_3MAL1fT.concise2015-04-17 18:20 85KPrediction: coiled-coil, solvent, alignment
[ ]jp_3MAL1fT.concise.blc2015-04-17 18:20 44KBLC format prediction and alignment data
[ ]jp_3MAL1fT.concise.fasta2015-04-17 18:20 44KPrediction: coiled-coil, solvent, alignment
[ ]jp_3MAL1fT.concise.pdf2015-04-17 18:20 296KPDF prediction and alignment data
[ ]jp_3MAL1fT.concise.ps2015-04-17 18:20 5.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_3MAL1fT.fasta2015-04-17 18:16 92 Input query sequence in FASTA format
[ ]jp_3MAL1fT.full_MSA.fasta2015-04-17 18:19 422KFull MSA before JPred filters in FASTA
[TXT]jp_3MAL1fT.full_MSA.fasta.noGaps.html2015-04-17 18:20 186KFull MSA before JPred filters in FASTA
[TXT]jp_3MAL1fT.full_MSA.fasta.withGaps.html2015-04-17 18:20 1.6MFull MSA before JPred filters in FASTA
[ ]jp_3MAL1fT.hmm2015-04-17 18:20 15KHHMer2 profile of the alignment
[TXT]jp_3MAL1fT.html2015-04-17 18:20 142KHTML prediction and alignment data
[ ]jp_3MAL1fT.input2015-04-17 17:12 85 Raw input data for analysis
[ ]jp_3MAL1fT.jalview2015-04-17 18:20 2.4KJalview annotation file for alignment
[ ]jp_3MAL1fT.jnet2015-04-17 18:20 2.9KJnet secondary structure output
[TXT]jp_3MAL1fT.profile2015-04-17 18:18 13KPSIBLAST profile from alignment
[ ]jp_3MAL1fT.pssm2015-04-17 18:20 17KPSIBLAST PSSM for Jnet
[TXT]jp_3MAL1fT.results.html2016-02-15 12:17 41KJPred results page
[TXT]jp_3MAL1fT.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_3MAL1fT.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_3MAL1fT.seq2015-04-17 17:12 92 Sequence data file
[TXT]jp_3MAL1fT.simple.html2015-04-17 18:20 1.1KBrief HTML: sequence and prediction only
[TXT]jp_3MAL1fT.svg.html2015-04-17 18:20 33KJalview SVG summary of results
[ ]jp_3MAL1fT.tar.gz2015-04-17 18:20 770KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.