JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:24 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1gxua_.name2015-04-17 17:48 0 Job name flag file
[ ]jp_2b7T55o.align2015-04-17 19:23 98KPSIBLAST alignment in FASTA format
[TXT]jp_2b7T55o.als2015-04-17 19:23 2.2KAlscript command file for PS/PDF output
[ ]jp_2b7T55o.blast.gz2015-04-17 19:23 1.3MCompressed PSIBLAST output file
[TXT]jp_2b7T55o.coils.csv2015-04-17 19:23 558 COILS output in CSV format
[ ]jp_2b7T55o.coilseq.lupas_142015-04-17 19:23 3.7KCOILS output, window length 14
[ ]jp_2b7T55o.coilseq.lupas_212015-04-17 19:23 3.7KCOILS output, window length 21
[ ]jp_2b7T55o.coilseq.lupas_282015-04-17 19:23 3.7KCOILS output, window length 28
[ ]jp_2b7T55o.concise2015-04-17 19:23 187KPrediction: coiled-coil, solvent, alignment
[ ]jp_2b7T55o.concise.blc2015-04-17 19:23 98KBLC format prediction and alignment data
[ ]jp_2b7T55o.concise.fasta2015-04-17 19:23 99KPrediction: coiled-coil, solvent, alignment
[ ]jp_2b7T55o.concise.pdf2015-04-17 19:23 641KPDF prediction and alignment data
[ ]jp_2b7T55o.concise.ps2015-04-17 19:23 11MPrediction: coiled-coil, solvent, alignment
[ ]jp_2b7T55o.fasta2015-04-17 19:16 102 Input query sequence in FASTA format
[ ]jp_2b7T55o.full_MSA.fasta2015-04-17 19:23 2.3MFull MSA before JPred filters in FASTA
[TXT]jp_2b7T55o.full_MSA.fasta.noGaps.html2015-04-17 19:24 905KFull MSA before JPred filters in FASTA
[TXT]jp_2b7T55o.full_MSA.fasta.withGaps.html2015-04-17 19:24 10MFull MSA before JPred filters in FASTA
[ ]jp_2b7T55o.hmm2015-04-17 19:23 17KHHMer2 profile of the alignment
[TXT]jp_2b7T55o.html2015-04-17 19:23 286KHTML prediction and alignment data
[ ]jp_2b7T55o.input2015-04-17 17:48 95 Raw input data for analysis
[ ]jp_2b7T55o.jalview2015-04-17 19:23 2.6KJalview annotation file for alignment
[ ]jp_2b7T55o.jnet2015-04-17 19:23 3.3KJnet secondary structure output
[TXT]jp_2b7T55o.profile2015-04-17 19:21 14KPSIBLAST profile from alignment
[ ]jp_2b7T55o.pssm2015-04-17 19:23 19KPSIBLAST PSSM for Jnet
[TXT]jp_2b7T55o.results.html2016-02-15 12:17 46KJPred results page
[TXT]jp_2b7T55o.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_2b7T55o.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_2b7T55o.seq2015-04-17 17:48 102 Sequence data file
[TXT]jp_2b7T55o.simple.html2015-04-17 19:23 1.2KBrief HTML: sequence and prediction only
[TXT]jp_2b7T55o.svg.html2015-04-17 19:24 38KJalview SVG summary of results
[ ]jp_2b7T55o.tar.gz2015-04-17 19:24 3.2MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.