JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:22 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1h2ca_.name2015-04-17 15:20 0 Job name flag file
[ ]jp_AxS8sII.align2015-04-17 15:22 419 PSIBLAST alignment in FASTA format
[TXT]jp_AxS8sII.als2015-04-17 15:22 2.5KAlscript command file for PS/PDF output
[ ]jp_AxS8sII.blast.gz2015-04-17 15:22 2.2KCompressed PSIBLAST output file
[TXT]jp_AxS8sII.coils.csv2015-04-17 15:22 774 COILS output in CSV format
[ ]jp_AxS8sII.coilseq.lupas_142015-04-17 15:22 5.2KCOILS output, window length 14
[ ]jp_AxS8sII.coilseq.lupas_212015-04-17 15:22 5.2KCOILS output, window length 21
[ ]jp_AxS8sII.coilseq.lupas_282015-04-17 15:22 5.2KCOILS output, window length 28
[ ]jp_AxS8sII.concise2015-04-17 15:22 6.1KPrediction: coiled-coil, solvent, alignment
[ ]jp_AxS8sII.concise.blc2015-04-17 15:22 2.3KBLC format prediction and alignment data
[ ]jp_AxS8sII.concise.fasta2015-04-17 15:22 1.7KPrediction: coiled-coil, solvent, alignment
[ ]jp_AxS8sII.concise.pdf2015-04-17 15:22 16KPDF prediction and alignment data
[ ]jp_AxS8sII.concise.ps2015-04-17 15:22 267KPrediction: coiled-coil, solvent, alignment
[ ]jp_AxS8sII.fasta2015-04-17 15:20 138 Input query sequence in FASTA format
[ ]jp_AxS8sII.full_MSA.fasta2015-04-17 15:22 1.1KFull MSA before JPred filters in FASTA
[TXT]jp_AxS8sII.full_MSA.fasta.noGaps.html2015-04-17 15:22 2.0KFull MSA before JPred filters in FASTA
[TXT]jp_AxS8sII.full_MSA.fasta.withGaps.html2015-04-17 15:22 2.0KFull MSA before JPred filters in FASTA
[ ]jp_AxS8sII.hmm2015-04-17 15:22 23KHHMer2 profile of the alignment
[TXT]jp_AxS8sII.html2015-04-17 15:22 13KHTML prediction and alignment data
[ ]jp_AxS8sII.input2015-04-17 15:20 131 Raw input data for analysis
[ ]jp_AxS8sII.jalview2015-04-17 15:22 3.3KJalview annotation file for alignment
[ ]jp_AxS8sII.jnet2015-04-17 15:22 4.6KJnet secondary structure output
[TXT]jp_AxS8sII.profile2015-04-17 15:21 20KPSIBLAST profile from alignment
[ ]jp_AxS8sII.pssm2015-04-17 15:22 27KPSIBLAST PSSM for Jnet
[TXT]jp_AxS8sII.results.html2016-02-15 12:17 61KJPred results page
[TXT]jp_AxS8sII.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_AxS8sII.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_AxS8sII.seq2015-04-17 15:20 138 Sequence data file
[TXT]jp_AxS8sII.simple.html2015-04-17 15:22 1.3KBrief HTML: sequence and prediction only
[TXT]jp_AxS8sII.svg.html2015-04-17 15:22 53KJalview SVG summary of results
[ ]jp_AxS8sII.tar.gz2015-04-17 15:22 46KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.