JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:23 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1hc7a3.name2015-04-17 17:13 0 Job name flag file
[ ]jp_pdUmioB.align2015-04-17 18:23 90KPSIBLAST alignment in FASTA format
[TXT]jp_pdUmioB.als2015-04-17 18:23 2.1KAlscript command file for PS/PDF output
[ ]jp_pdUmioB.blast.gz2015-04-17 18:21 490KCompressed PSIBLAST output file
[TXT]jp_pdUmioB.coils.csv2015-04-17 18:23 474 COILS output in CSV format
[ ]jp_pdUmioB.coilseq.lupas_142015-04-17 18:23 3.1KCOILS output, window length 14
[ ]jp_pdUmioB.coilseq.lupas_212015-04-17 18:23 3.1KCOILS output, window length 21
[ ]jp_pdUmioB.coilseq.lupas_282015-04-17 18:23 3.1KCOILS output, window length 28
[ ]jp_pdUmioB.concise2015-04-17 18:23 171KPrediction: coiled-coil, solvent, alignment
[ ]jp_pdUmioB.concise.blc2015-04-17 18:23 90KBLC format prediction and alignment data
[ ]jp_pdUmioB.concise.fasta2015-04-17 18:23 91KPrediction: coiled-coil, solvent, alignment
[ ]jp_pdUmioB.concise.pdf2015-04-17 18:23 510KPDF prediction and alignment data
[ ]jp_pdUmioB.concise.ps2015-04-17 18:23 9.5MPrediction: coiled-coil, solvent, alignment
[ ]jp_pdUmioB.fasta2015-04-17 18:17 88 Input query sequence in FASTA format
[ ]jp_pdUmioB.full_MSA.fasta2015-04-17 18:21 928KFull MSA before JPred filters in FASTA
[TXT]jp_pdUmioB.full_MSA.fasta.noGaps.html2015-04-17 18:23 316KFull MSA before JPred filters in FASTA
[TXT]jp_pdUmioB.full_MSA.fasta.withGaps.html2015-04-17 18:23 2.9MFull MSA before JPred filters in FASTA
[ ]jp_pdUmioB.hmm2015-04-17 18:23 14KHHMer2 profile of the alignment
[TXT]jp_pdUmioB.html2015-04-17 18:23 288KHTML prediction and alignment data
[ ]jp_pdUmioB.input2015-04-17 17:13 81 Raw input data for analysis
[ ]jp_pdUmioB.jalview2015-04-17 18:23 2.3KJalview annotation file for alignment
[ ]jp_pdUmioB.jnet2015-04-17 18:23 2.8KJnet secondary structure output
[TXT]jp_pdUmioB.profile2015-04-17 18:19 12KPSIBLAST profile from alignment
[ ]jp_pdUmioB.pssm2015-04-17 18:23 16KPSIBLAST PSSM for Jnet
[TXT]jp_pdUmioB.results.html2016-02-15 12:17 41KJPred results page
[TXT]jp_pdUmioB.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_pdUmioB.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_pdUmioB.seq2015-04-17 17:13 88 Sequence data file
[TXT]jp_pdUmioB.simple.html2015-04-17 18:23 1.1KBrief HTML: sequence and prediction only
[TXT]jp_pdUmioB.svg.html2015-04-17 18:23 32KJalview SVG summary of results
[ ]jp_pdUmioB.tar.gz2015-04-17 18:23 1.4MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.