JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:17 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1hq1a_.name2015-04-17 16:34 0 Job name flag file
[ ]jp_knYk66J.align2015-04-17 17:17 89KPSIBLAST alignment in FASTA format
[TXT]jp_knYk66J.als2015-04-17 17:17 1.9KAlscript command file for PS/PDF output
[ ]jp_knYk66J.blast.gz2015-04-17 17:16 1.3MCompressed PSIBLAST output file
[TXT]jp_knYk66J.coils.csv2015-04-17 17:17 486 COILS output in CSV format
[ ]jp_knYk66J.coilseq.lupas_142015-04-17 17:17 3.2KCOILS output, window length 14
[ ]jp_knYk66J.coilseq.lupas_212015-04-17 17:17 3.2KCOILS output, window length 21
[ ]jp_knYk66J.coilseq.lupas_282015-04-17 17:17 3.2KCOILS output, window length 28
[ ]jp_knYk66J.concise2015-04-17 17:17 169KPrediction: coiled-coil, solvent, alignment
[ ]jp_knYk66J.concise.blc2015-04-17 17:17 88KBLC format prediction and alignment data
[ ]jp_knYk66J.concise.fasta2015-04-17 17:17 90KPrediction: coiled-coil, solvent, alignment
[ ]jp_knYk66J.concise.pdf2015-04-17 17:17 473KPDF prediction and alignment data
[ ]jp_knYk66J.concise.ps2015-04-17 17:17 9.3MPrediction: coiled-coil, solvent, alignment
[ ]jp_knYk66J.fasta2015-04-17 17:14 90 Input query sequence in FASTA format
[ ]jp_knYk66J.full_MSA.fasta2015-04-17 17:16 2.9MFull MSA before JPred filters in FASTA
[TXT]jp_knYk66J.full_MSA.fasta.noGaps.html2015-04-17 17:17 607KFull MSA before JPred filters in FASTA
[TXT]jp_knYk66J.full_MSA.fasta.withGaps.html2015-04-17 17:17 6.8MFull MSA before JPred filters in FASTA
[ ]jp_knYk66J.hmm2015-04-17 17:17 14KHHMer2 profile of the alignment
[TXT]jp_knYk66J.html2015-04-17 17:17 280KHTML prediction and alignment data
[ ]jp_knYk66J.input2015-04-17 16:34 83 Raw input data for analysis
[ ]jp_knYk66J.jalview2015-04-17 17:17 2.4KJalview annotation file for alignment
[ ]jp_knYk66J.jnet2015-04-17 17:17 2.9KJnet secondary structure output
[TXT]jp_knYk66J.profile2015-04-17 17:16 13KPSIBLAST profile from alignment
[ ]jp_knYk66J.pssm2015-04-17 17:17 16KPSIBLAST PSSM for Jnet
[TXT]jp_knYk66J.results.html2016-02-15 12:17 41KJPred results page
[TXT]jp_knYk66J.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_knYk66J.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_knYk66J.seq2015-04-17 16:34 90 Sequence data file
[TXT]jp_knYk66J.simple.html2015-04-17 17:17 1.1KBrief HTML: sequence and prediction only
[TXT]jp_knYk66J.svg.html2015-04-17 17:17 33KJalview SVG summary of results
[ ]jp_knYk66J.tar.gz2015-04-17 17:18 2.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.