JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:42 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1hufa_.name2015-04-17 15:34 0 Job name flag file
[ ]jp_4ADkXeH.align2015-04-17 15:42 1.0KPSIBLAST alignment in FASTA format
[TXT]jp_4ADkXeH.als2015-04-17 15:42 2.5KAlscript command file for PS/PDF output
[ ]jp_4ADkXeH.blast.gz2015-04-17 15:42 2.7KCompressed PSIBLAST output file
[TXT]jp_4ADkXeH.coils.csv2015-04-17 15:42 768 COILS output in CSV format
[ ]jp_4ADkXeH.coilseq.lupas_142015-04-17 15:42 5.2KCOILS output, window length 14
[ ]jp_4ADkXeH.coilseq.lupas_212015-04-17 15:42 5.2KCOILS output, window length 21
[ ]jp_4ADkXeH.coilseq.lupas_282015-04-17 15:42 5.2KCOILS output, window length 28
[ ]jp_4ADkXeH.concise2015-04-17 15:42 7.1KPrediction: coiled-coil, solvent, alignment
[ ]jp_4ADkXeH.concise.blc2015-04-17 15:42 2.9KBLC format prediction and alignment data
[ ]jp_4ADkXeH.concise.fasta2015-04-17 15:42 2.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_4ADkXeH.concise.pdf2015-04-17 15:42 20KPDF prediction and alignment data
[ ]jp_4ADkXeH.concise.ps2015-04-17 15:42 334KPrediction: coiled-coil, solvent, alignment
[ ]jp_4ADkXeH.fasta2015-04-17 15:41 137 Input query sequence in FASTA format
[ ]jp_4ADkXeH.full_MSA.fasta2015-04-17 15:42 1.3KFull MSA before JPred filters in FASTA
[TXT]jp_4ADkXeH.full_MSA.fasta.noGaps.html2015-04-17 15:42 2.3KFull MSA before JPred filters in FASTA
[TXT]jp_4ADkXeH.full_MSA.fasta.withGaps.html2015-04-17 15:42 2.9KFull MSA before JPred filters in FASTA
[ ]jp_4ADkXeH.hmm2015-04-17 15:42 23KHHMer2 profile of the alignment
[TXT]jp_4ADkXeH.html2015-04-17 15:42 15KHTML prediction and alignment data
[ ]jp_4ADkXeH.input2015-04-17 15:34 130 Raw input data for analysis
[ ]jp_4ADkXeH.jalview2015-04-17 15:42 3.3KJalview annotation file for alignment
[ ]jp_4ADkXeH.jnet2015-04-17 15:42 4.6KJnet secondary structure output
[TXT]jp_4ADkXeH.profile2015-04-17 15:42 20KPSIBLAST profile from alignment
[ ]jp_4ADkXeH.pssm2015-04-17 15:42 26KPSIBLAST PSSM for Jnet
[TXT]jp_4ADkXeH.results.html2016-02-15 12:17 60KJPred results page
[TXT]jp_4ADkXeH.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_4ADkXeH.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_4ADkXeH.seq2015-04-17 15:34 137 Sequence data file
[TXT]jp_4ADkXeH.simple.html2015-04-17 15:42 1.3KBrief HTML: sequence and prediction only
[TXT]jp_4ADkXeH.svg.html2015-04-17 15:42 52KJalview SVG summary of results
[ ]jp_4ADkXeH.tar.gz2015-04-17 15:42 54KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.