JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:57 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1iq4a_.name2015-04-17 15:40 0 Job name flag file
[ ]jp_w9n1Tyb.align2015-04-17 15:56 140KPSIBLAST alignment in FASTA format
[TXT]jp_w9n1Tyb.als2015-04-17 15:56 2.6KAlscript command file for PS/PDF output
[ ]jp_w9n1Tyb.blast.gz2015-04-17 15:55 1.7MCompressed PSIBLAST output file
[TXT]jp_w9n1Tyb.coils.csv2015-04-17 15:56 1.1KCOILS output in CSV format
[ ]jp_w9n1Tyb.coilseq.lupas_142015-04-17 15:56 7.5KCOILS output, window length 14
[ ]jp_w9n1Tyb.coilseq.lupas_212015-04-17 15:56 7.5KCOILS output, window length 21
[ ]jp_w9n1Tyb.coilseq.lupas_282015-04-17 15:56 7.5KCOILS output, window length 28
[ ]jp_w9n1Tyb.concise2015-04-17 15:56 276KPrediction: coiled-coil, solvent, alignment
[ ]jp_w9n1Tyb.concise.blc2015-04-17 15:56 140KBLC format prediction and alignment data
[ ]jp_w9n1Tyb.concise.fasta2015-04-17 15:56 141KPrediction: coiled-coil, solvent, alignment
[ ]jp_w9n1Tyb.concise.pdf2015-04-17 15:56 926KPDF prediction and alignment data
[ ]jp_w9n1Tyb.concise.ps2015-04-17 15:56 17MPrediction: coiled-coil, solvent, alignment
[ ]jp_w9n1Tyb.fasta2015-04-17 15:51 194 Input query sequence in FASTA format
[ ]jp_w9n1Tyb.full_MSA.fasta2015-04-17 15:55 3.1MFull MSA before JPred filters in FASTA
[TXT]jp_w9n1Tyb.full_MSA.fasta.noGaps.html2015-04-17 15:56 899KFull MSA before JPred filters in FASTA
[TXT]jp_w9n1Tyb.full_MSA.fasta.withGaps.html2015-04-17 15:56 12MFull MSA before JPred filters in FASTA
[ ]jp_w9n1Tyb.hmm2015-04-17 15:56 34KHHMer2 profile of the alignment
[TXT]jp_w9n1Tyb.html2015-04-17 15:56 293KHTML prediction and alignment data
[ ]jp_w9n1Tyb.input2015-04-17 15:40 186 Raw input data for analysis
[ ]jp_w9n1Tyb.jalview2015-04-17 15:56 4.4KJalview annotation file for alignment
[ ]jp_w9n1Tyb.jnet2015-04-17 15:56 6.6KJnet secondary structure output
[TXT]jp_w9n1Tyb.profile2015-04-17 15:54 29KPSIBLAST profile from alignment
[ ]jp_w9n1Tyb.pssm2015-04-17 15:56 38KPSIBLAST PSSM for Jnet
[TXT]jp_w9n1Tyb.results.html2016-02-15 12:17 79KJPred results page
[TXT]jp_w9n1Tyb.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_w9n1Tyb.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_w9n1Tyb.seq2015-04-17 15:40 194 Sequence data file
[TXT]jp_w9n1Tyb.simple.html2015-04-17 15:56 1.4KBrief HTML: sequence and prediction only
[TXT]jp_w9n1Tyb.svg.html2015-04-17 15:57 71KJalview SVG summary of results
[ ]jp_w9n1Tyb.tar.gz2015-04-17 15:57 3.8MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.