JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:21 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1iqza_.name2015-04-17 17:50 0 Job name flag file
[ ]jp_3rXbDmA.align2015-04-17 19:21 102KPSIBLAST alignment in FASTA format
[TXT]jp_3rXbDmA.als2015-04-17 19:21 2.1KAlscript command file for PS/PDF output
[ ]jp_3rXbDmA.blast.gz2015-04-17 19:20 757KCompressed PSIBLAST output file
[TXT]jp_3rXbDmA.coils.csv2015-04-17 19:21 516 COILS output in CSV format
[ ]jp_3rXbDmA.coilseq.lupas_142015-04-17 19:21 3.4KCOILS output, window length 14
[ ]jp_3rXbDmA.coilseq.lupas_212015-04-17 19:21 3.4KCOILS output, window length 21
[ ]jp_3rXbDmA.coilseq.lupas_282015-04-17 19:21 3.4KCOILS output, window length 28
[ ]jp_3rXbDmA.concise2015-04-17 19:21 194KPrediction: coiled-coil, solvent, alignment
[ ]jp_3rXbDmA.concise.blc2015-04-17 19:21 101KBLC format prediction and alignment data
[ ]jp_3rXbDmA.concise.fasta2015-04-17 19:21 103KPrediction: coiled-coil, solvent, alignment
[ ]jp_3rXbDmA.concise.pdf2015-04-17 19:21 599KPDF prediction and alignment data
[ ]jp_3rXbDmA.concise.ps2015-04-17 19:21 11MPrediction: coiled-coil, solvent, alignment
[ ]jp_3rXbDmA.fasta2015-04-17 19:18 95 Input query sequence in FASTA format
[ ]jp_3rXbDmA.full_MSA.fasta2015-04-17 19:20 2.1MFull MSA before JPred filters in FASTA
[TXT]jp_3rXbDmA.full_MSA.fasta.noGaps.html2015-04-17 19:21 834KFull MSA before JPred filters in FASTA
[TXT]jp_3rXbDmA.full_MSA.fasta.withGaps.html2015-04-17 19:21 9.2MFull MSA before JPred filters in FASTA
[ ]jp_3rXbDmA.hmm2015-04-17 19:21 15KHHMer2 profile of the alignment
[TXT]jp_3rXbDmA.html2015-04-17 19:21 308KHTML prediction and alignment data
[ ]jp_3rXbDmA.input2015-04-17 17:50 88 Raw input data for analysis
[ ]jp_3rXbDmA.jalview2015-04-17 19:21 2.4KJalview annotation file for alignment
[ ]jp_3rXbDmA.jnet2015-04-17 19:21 3.0KJnet secondary structure output
[TXT]jp_3rXbDmA.profile2015-04-17 19:19 13KPSIBLAST profile from alignment
[ ]jp_3rXbDmA.pssm2015-04-17 19:21 17KPSIBLAST PSSM for Jnet
[TXT]jp_3rXbDmA.results.html2016-02-15 12:17 43KJPred results page
[TXT]jp_3rXbDmA.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_3rXbDmA.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_3rXbDmA.seq2015-04-17 17:50 95 Sequence data file
[TXT]jp_3rXbDmA.simple.html2015-04-17 19:21 1.2KBrief HTML: sequence and prediction only
[TXT]jp_3rXbDmA.svg.html2015-04-17 19:21 35KJalview SVG summary of results
[ ]jp_3rXbDmA.tar.gz2015-04-17 19:21 2.3MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.