JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

Home
REST API
About
F.A.Q.
Help & Tutorials
Monitoring
Contact
Publications
 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:21 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1jb0f_.name2015-04-17 16:35 0 Job name flag file
[ ]jp_ps3Ch4g.align2015-04-17 17:21 16KPSIBLAST alignment in FASTA format
[TXT]jp_ps3Ch4g.als2015-04-17 17:21 2.4KAlscript command file for PS/PDF output
[ ]jp_ps3Ch4g.blast.gz2015-04-17 17:21 65KCompressed PSIBLAST output file
[TXT]jp_ps3Ch4g.coils.csv2015-04-17 17:21 876 COILS output in CSV format
[ ]jp_ps3Ch4g.coilseq.lupas_142015-04-17 17:21 5.9KCOILS output, window length 14
[ ]jp_ps3Ch4g.coilseq.lupas_212015-04-17 17:21 5.9KCOILS output, window length 21
[ ]jp_ps3Ch4g.coilseq.lupas_282015-04-17 17:21 5.9KCOILS output, window length 28
[ ]jp_ps3Ch4g.concise2015-04-17 17:21 36KPrediction: coiled-coil, solvent, alignment
[ ]jp_ps3Ch4g.concise.blc2015-04-17 17:21 18KBLC format prediction and alignment data
[ ]jp_ps3Ch4g.concise.fasta2015-04-17 17:21 17KPrediction: coiled-coil, solvent, alignment
[ ]jp_ps3Ch4g.concise.pdf2015-04-17 17:21 117KPDF prediction and alignment data
[ ]jp_ps3Ch4g.concise.ps2015-04-17 17:21 2.1MPrediction: coiled-coil, solvent, alignment
[ ]jp_ps3Ch4g.fasta2015-04-17 17:17 155 Input query sequence in FASTA format
[ ]jp_ps3Ch4g.full_MSA.fasta2015-04-17 17:21 83KFull MSA before JPred filters in FASTA
[TXT]jp_ps3Ch4g.full_MSA.fasta.noGaps.html2015-04-17 17:21 53KFull MSA before JPred filters in FASTA
[TXT]jp_ps3Ch4g.full_MSA.fasta.withGaps.html2015-04-17 17:21 246KFull MSA before JPred filters in FASTA
[ ]jp_ps3Ch4g.hmm2015-04-17 17:21 26KHHMer2 profile of the alignment
[TXT]jp_ps3Ch4g.html2015-04-17 17:21 48KHTML prediction and alignment data
[ ]jp_ps3Ch4g.input2015-04-17 16:35 148 Raw input data for analysis
[ ]jp_ps3Ch4g.jalview2015-04-17 17:21 3.7KJalview annotation file for alignment
[ ]jp_ps3Ch4g.jnet2015-04-17 17:21 5.2KJnet secondary structure output
[TXT]jp_ps3Ch4g.profile2015-04-17 17:20 23KPSIBLAST profile from alignment
[ ]jp_ps3Ch4g.pssm2015-04-17 17:21 30KPSIBLAST PSSM for Jnet
[TXT]jp_ps3Ch4g.results.html2016-02-15 12:17 65KJPred results page
[TXT]jp_ps3Ch4g.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_ps3Ch4g.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_ps3Ch4g.seq2015-04-17 16:35 155 Sequence data file
[TXT]jp_ps3Ch4g.simple.html2015-04-17 17:21 1.3KBrief HTML: sequence and prediction only
[TXT]jp_ps3Ch4g.svg.html2015-04-17 17:21 57KJalview SVG summary of results
[ ]jp_ps3Ch4g.tar.gz2015-04-17 17:21 262KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.