JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:19 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1jb0j_.name2015-04-17 15:59 0 Job name flag file
[ ]jp_eW7X_Rl.align2015-04-17 16:19 521 PSIBLAST alignment in FASTA format
[TXT]jp_eW7X_Rl.als2015-04-17 16:19 1.3KAlscript command file for PS/PDF output
[ ]jp_eW7X_Rl.blast.gz2015-04-17 16:19 2.1KCompressed PSIBLAST output file
[TXT]jp_eW7X_Rl.coils.csv2015-04-17 16:19 276 COILS output in CSV format
[ ]jp_eW7X_Rl.coilseq.lupas_142015-04-17 16:19 1.7KCOILS output, window length 14
[ ]jp_eW7X_Rl.coilseq.lupas_212015-04-17 16:19 1.7KCOILS output, window length 21
[ ]jp_eW7X_Rl.coilseq.lupas_282015-04-17 16:19 1.7KCOILS output, window length 28
[ ]jp_eW7X_Rl.concise2015-04-17 16:19 2.8KPrediction: coiled-coil, solvent, alignment
[ ]jp_eW7X_Rl.concise.blc2015-04-17 16:19 1.2KBLC format prediction and alignment data
[ ]jp_eW7X_Rl.concise.fasta2015-04-17 16:19 1.0KPrediction: coiled-coil, solvent, alignment
[ ]jp_eW7X_Rl.concise.pdf2015-04-17 16:19 9.0KPDF prediction and alignment data
[ ]jp_eW7X_Rl.concise.ps2015-04-17 16:19 123KPrediction: coiled-coil, solvent, alignment
[ ]jp_eW7X_Rl.fasta2015-04-17 16:17 54 Input query sequence in FASTA format
[ ]jp_eW7X_Rl.full_MSA.fasta2015-04-17 16:19 698 Full MSA before JPred filters in FASTA
[TXT]jp_eW7X_Rl.full_MSA.fasta.noGaps.html2015-04-17 16:19 2.2KFull MSA before JPred filters in FASTA
[TXT]jp_eW7X_Rl.full_MSA.fasta.withGaps.html2015-04-17 16:19 2.2KFull MSA before JPred filters in FASTA
[ ]jp_eW7X_Rl.hmm2015-04-17 16:19 7.7KHHMer2 profile of the alignment
[TXT]jp_eW7X_Rl.html2015-04-17 16:19 7.8KHTML prediction and alignment data
[ ]jp_eW7X_Rl.input2015-04-17 15:59 48 Raw input data for analysis
[ ]jp_eW7X_Rl.jalview2015-04-17 16:19 1.6KJalview annotation file for alignment
[ ]jp_eW7X_Rl.jnet2015-04-17 16:19 1.6KJnet secondary structure output
[TXT]jp_eW7X_Rl.profile2015-04-17 16:18 7.0KPSIBLAST profile from alignment
[ ]jp_eW7X_Rl.pssm2015-04-17 16:19 8.8KPSIBLAST PSSM for Jnet
[TXT]jp_eW7X_Rl.results.html2016-02-15 12:17 27KJPred results page
[TXT]jp_eW7X_Rl.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_eW7X_Rl.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_eW7X_Rl.seq2015-04-17 15:59 54 Sequence data file
[TXT]jp_eW7X_Rl.simple.html2015-04-17 16:19 963 Brief HTML: sequence and prediction only
[TXT]jp_eW7X_Rl.svg.html2015-04-17 16:19 19KJalview SVG summary of results
[ ]jp_eW7X_Rl.tar.gz2015-04-17 16:19 26KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.