JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:27 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1jkea_.name2015-04-17 17:14 0 Job name flag file
[ ]jp_SDqmKO1.align2015-04-17 18:26 132KPSIBLAST alignment in FASTA format
[TXT]jp_SDqmKO1.als2015-04-17 18:26 2.8KAlscript command file for PS/PDF output
[ ]jp_SDqmKO1.blast.gz2015-04-17 18:26 1.9MCompressed PSIBLAST output file
[TXT]jp_SDqmKO1.coils.csv2015-04-17 18:26 900 COILS output in CSV format
[ ]jp_SDqmKO1.coilseq.lupas_142015-04-17 18:26 6.1KCOILS output, window length 14
[ ]jp_SDqmKO1.coilseq.lupas_212015-04-17 18:26 6.1KCOILS output, window length 21
[ ]jp_SDqmKO1.coilseq.lupas_282015-04-17 18:26 6.1KCOILS output, window length 28
[ ]jp_SDqmKO1.concise2015-04-17 18:26 257KPrediction: coiled-coil, solvent, alignment
[ ]jp_SDqmKO1.concise.blc2015-04-17 18:26 132KBLC format prediction and alignment data
[ ]jp_SDqmKO1.concise.fasta2015-04-17 18:26 133KPrediction: coiled-coil, solvent, alignment
[ ]jp_SDqmKO1.concise.pdf2015-04-17 18:27 855KPDF prediction and alignment data
[ ]jp_SDqmKO1.concise.ps2015-04-17 18:26 16MPrediction: coiled-coil, solvent, alignment
[ ]jp_SDqmKO1.fasta2015-04-17 18:19 160 Input query sequence in FASTA format
[ ]jp_SDqmKO1.full_MSA.fasta2015-04-17 18:26 3.9MFull MSA before JPred filters in FASTA
[TXT]jp_SDqmKO1.full_MSA.fasta.noGaps.html2015-04-17 18:27 923KFull MSA before JPred filters in FASTA
[TXT]jp_SDqmKO1.full_MSA.fasta.withGaps.html2015-04-17 18:27 11MFull MSA before JPred filters in FASTA
[ ]jp_SDqmKO1.hmm2015-04-17 18:26 27KHHMer2 profile of the alignment
[TXT]jp_SDqmKO1.html2015-04-17 18:26 301KHTML prediction and alignment data
[ ]jp_SDqmKO1.input2015-04-17 17:14 152 Raw input data for analysis
[ ]jp_SDqmKO1.jalview2015-04-17 18:26 3.7KJalview annotation file for alignment
[ ]jp_SDqmKO1.jnet2015-04-17 18:26 5.4KJnet secondary structure output
[TXT]jp_SDqmKO1.profile2015-04-17 18:25 23KPSIBLAST profile from alignment
[ ]jp_SDqmKO1.pssm2015-04-17 18:26 31KPSIBLAST PSSM for Jnet
[TXT]jp_SDqmKO1.results.html2016-02-15 12:17 68KJPred results page
[TXT]jp_SDqmKO1.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_SDqmKO1.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_SDqmKO1.seq2015-04-17 17:14 160 Sequence data file
[TXT]jp_SDqmKO1.simple.html2015-04-17 18:26 1.4KBrief HTML: sequence and prediction only
[TXT]jp_SDqmKO1.svg.html2015-04-17 18:27 59KJalview SVG summary of results
[ ]jp_SDqmKO1.tar.gz2015-04-17 18:27 4.1MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.