JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:21 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1k3xa1.name2015-04-17 15:59 0 Job name flag file
[ ]jp_Lmy3Gmq.align2015-04-17 16:21 102KPSIBLAST alignment in FASTA format
[TXT]jp_Lmy3Gmq.als2015-04-17 16:21 1.9KAlscript command file for PS/PDF output
[ ]jp_Lmy3Gmq.blast.gz2015-04-17 16:20 1.4MCompressed PSIBLAST output file
[TXT]jp_Lmy3Gmq.coils.csv2015-04-17 16:21 564 COILS output in CSV format
[ ]jp_Lmy3Gmq.coilseq.lupas_142015-04-17 16:21 3.7KCOILS output, window length 14
[ ]jp_Lmy3Gmq.coilseq.lupas_212015-04-17 16:21 3.7KCOILS output, window length 21
[ ]jp_Lmy3Gmq.coilseq.lupas_282015-04-17 16:21 3.7KCOILS output, window length 28
[ ]jp_Lmy3Gmq.concise2015-04-17 16:21 194KPrediction: coiled-coil, solvent, alignment
[ ]jp_Lmy3Gmq.concise.blc2015-04-17 16:21 101KBLC format prediction and alignment data
[ ]jp_Lmy3Gmq.concise.fasta2015-04-17 16:21 103KPrediction: coiled-coil, solvent, alignment
[ ]jp_Lmy3Gmq.concise.pdf2015-04-17 16:21 665KPDF prediction and alignment data
[ ]jp_Lmy3Gmq.concise.ps2015-04-17 16:21 11MPrediction: coiled-coil, solvent, alignment
[ ]jp_Lmy3Gmq.fasta2015-04-17 16:17 103 Input query sequence in FASTA format
[ ]jp_Lmy3Gmq.full_MSA.fasta2015-04-17 16:20 2.8MFull MSA before JPred filters in FASTA
[TXT]jp_Lmy3Gmq.full_MSA.fasta.noGaps.html2015-04-17 16:21 1.0MFull MSA before JPred filters in FASTA
[TXT]jp_Lmy3Gmq.full_MSA.fasta.withGaps.html2015-04-17 16:21 11MFull MSA before JPred filters in FASTA
[ ]jp_Lmy3Gmq.hmm2015-04-17 16:21 17KHHMer2 profile of the alignment
[TXT]jp_Lmy3Gmq.html2015-04-17 16:21 293KHTML prediction and alignment data
[ ]jp_Lmy3Gmq.input2015-04-17 15:59 96 Raw input data for analysis
[ ]jp_Lmy3Gmq.jalview2015-04-17 16:21 2.6KJalview annotation file for alignment
[ ]jp_Lmy3Gmq.jnet2015-04-17 16:21 3.3KJnet secondary structure output
[TXT]jp_Lmy3Gmq.profile2015-04-17 16:19 15KPSIBLAST profile from alignment
[ ]jp_Lmy3Gmq.pssm2015-04-17 16:21 19KPSIBLAST PSSM for Jnet
[TXT]jp_Lmy3Gmq.results.html2016-02-15 12:17 46KJPred results page
[TXT]jp_Lmy3Gmq.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_Lmy3Gmq.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_Lmy3Gmq.seq2015-04-17 15:59 103 Sequence data file
[TXT]jp_Lmy3Gmq.simple.html2015-04-17 16:21 1.1KBrief HTML: sequence and prediction only
[TXT]jp_Lmy3Gmq.svg.html2015-04-17 16:21 38KJalview SVG summary of results
[ ]jp_Lmy3Gmq.tar.gz2015-04-17 16:21 3.3MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.