JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:28 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1k3xa2.name2015-04-17 18:25 0 Job name flag file
[ ]jp_oZ7aqvl.align2015-04-17 20:28 135KPSIBLAST alignment in FASTA format
[TXT]jp_oZ7aqvl.als2015-04-17 20:28 2.7KAlscript command file for PS/PDF output
[ ]jp_oZ7aqvl.blast.gz2015-04-17 20:27 2.4MCompressed PSIBLAST output file
[TXT]jp_oZ7aqvl.coils.csv2015-04-17 20:28 774 COILS output in CSV format
[ ]jp_oZ7aqvl.coilseq.lupas_142015-04-17 20:28 5.2KCOILS output, window length 14
[ ]jp_oZ7aqvl.coilseq.lupas_212015-04-17 20:28 5.2KCOILS output, window length 21
[ ]jp_oZ7aqvl.coilseq.lupas_282015-04-17 20:28 5.2KCOILS output, window length 28
[ ]jp_oZ7aqvl.concise2015-04-17 20:28 261KPrediction: coiled-coil, solvent, alignment
[ ]jp_oZ7aqvl.concise.blc2015-04-17 20:28 135KBLC format prediction and alignment data
[ ]jp_oZ7aqvl.concise.fasta2015-04-17 20:28 136KPrediction: coiled-coil, solvent, alignment
[ ]jp_oZ7aqvl.concise.pdf2015-04-17 20:28 947KPDF prediction and alignment data
[ ]jp_oZ7aqvl.concise.ps2015-04-17 20:28 16MPrediction: coiled-coil, solvent, alignment
[ ]jp_oZ7aqvl.fasta2015-04-17 20:18 138 Input query sequence in FASTA format
[ ]jp_oZ7aqvl.full_MSA.fasta2015-04-17 20:27 7.5MFull MSA before JPred filters in FASTA
[TXT]jp_oZ7aqvl.full_MSA.fasta.noGaps.html2015-04-17 20:28 1.1MFull MSA before JPred filters in FASTA
[TXT]jp_oZ7aqvl.full_MSA.fasta.withGaps.html2015-04-17 20:28 19MFull MSA before JPred filters in FASTA
[ ]jp_oZ7aqvl.hmm2015-04-17 20:28 23KHHMer2 profile of the alignment
[TXT]jp_oZ7aqvl.html2015-04-17 20:28 329KHTML prediction and alignment data
[ ]jp_oZ7aqvl.input2015-04-17 18:25 131 Raw input data for analysis
[ ]jp_oZ7aqvl.jalview2015-04-17 20:28 3.3KJalview annotation file for alignment
[ ]jp_oZ7aqvl.jnet2015-04-17 20:28 4.6KJnet secondary structure output
[TXT]jp_oZ7aqvl.profile2015-04-17 20:24 20KPSIBLAST profile from alignment
[ ]jp_oZ7aqvl.pssm2015-04-17 20:28 27KPSIBLAST PSSM for Jnet
[TXT]jp_oZ7aqvl.results.html2016-02-15 12:17 60KJPred results page
[TXT]jp_oZ7aqvl.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_oZ7aqvl.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_oZ7aqvl.seq2015-04-17 18:25 138 Sequence data file
[TXT]jp_oZ7aqvl.simple.html2015-04-17 20:28 1.4KBrief HTML: sequence and prediction only
[TXT]jp_oZ7aqvl.svg.html2015-04-17 20:28 51KJalview SVG summary of results
[ ]jp_oZ7aqvl.tar.gz2015-04-17 20:28 5.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.