JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:47 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1k4ta1.name2015-04-17 15:22 0 Job name flag file
[ ]jp_E8Rn1Pn.align2015-04-17 15:47 800 PSIBLAST alignment in FASTA format
[TXT]jp_E8Rn1Pn.als2015-04-17 15:47 1.5KAlscript command file for PS/PDF output
[ ]jp_E8Rn1Pn.blast.gz2015-04-17 15:47 3.5KCompressed PSIBLAST output file
[TXT]jp_E8Rn1Pn.coils.csv2015-04-17 15:47 462 COILS output in CSV format
[ ]jp_E8Rn1Pn.coilseq.lupas_142015-04-17 15:47 3.0KCOILS output, window length 14
[ ]jp_E8Rn1Pn.coilseq.lupas_212015-04-17 15:47 3.0KCOILS output, window length 21
[ ]jp_E8Rn1Pn.coilseq.lupas_282015-04-17 15:47 3.0KCOILS output, window length 28
[ ]jp_E8Rn1Pn.concise2015-04-17 15:47 4.6KPrediction: coiled-coil, solvent, alignment
[ ]jp_E8Rn1Pn.concise.blc2015-04-17 15:47 1.9KBLC format prediction and alignment data
[ ]jp_E8Rn1Pn.concise.fasta2015-04-17 15:47 1.6KPrediction: coiled-coil, solvent, alignment
[ ]jp_E8Rn1Pn.concise.pdf2015-04-17 15:47 13KPDF prediction and alignment data
[ ]jp_E8Rn1Pn.concise.ps2015-04-17 15:47 215KPrediction: coiled-coil, solvent, alignment
[ ]jp_E8Rn1Pn.fasta2015-04-17 15:22 86 Input query sequence in FASTA format
[ ]jp_E8Rn1Pn.full_MSA.fasta2015-04-17 15:47 2.3KFull MSA before JPred filters in FASTA
[TXT]jp_E8Rn1Pn.full_MSA.fasta.noGaps.html2015-04-17 15:47 4.9KFull MSA before JPred filters in FASTA
[TXT]jp_E8Rn1Pn.full_MSA.fasta.withGaps.html2015-04-17 15:47 7.4KFull MSA before JPred filters in FASTA
[ ]jp_E8Rn1Pn.hmm2015-04-17 15:47 14KHHMer2 profile of the alignment
[TXT]jp_E8Rn1Pn.html2015-04-17 15:47 15KHTML prediction and alignment data
[ ]jp_E8Rn1Pn.input2015-04-17 15:22 79 Raw input data for analysis
[ ]jp_E8Rn1Pn.jalview2015-04-17 15:47 2.3KJalview annotation file for alignment
[ ]jp_E8Rn1Pn.jnet2015-04-17 15:47 2.7KJnet secondary structure output
[TXT]jp_E8Rn1Pn.profile2015-04-17 15:44 12KPSIBLAST profile from alignment
[ ]jp_E8Rn1Pn.pssm2015-04-17 15:47 15KPSIBLAST PSSM for Jnet
[TXT]jp_E8Rn1Pn.results.html2016-02-15 12:17 38KJPred results page
[TXT]jp_E8Rn1Pn.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_E8Rn1Pn.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_E8Rn1Pn.seq2015-04-17 15:22 86 Sequence data file
[TXT]jp_E8Rn1Pn.simple.html2015-04-17 15:47 1.0KBrief HTML: sequence and prediction only
[TXT]jp_E8Rn1Pn.svg.html2015-04-17 15:47 30KJalview SVG summary of results
[ ]jp_E8Rn1Pn.tar.gz2015-04-17 15:47 37KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.