JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:23 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1kjna_.name2015-04-17 17:15 0 Job name flag file
[ ]jp_9lz7HE1.align2015-04-17 18:23 5.0KPSIBLAST alignment in FASTA format
[TXT]jp_9lz7HE1.als2015-04-17 18:23 2.9KAlscript command file for PS/PDF output
[ ]jp_9lz7HE1.blast.gz2015-04-17 18:23 10KCompressed PSIBLAST output file
[TXT]jp_9lz7HE1.coils.csv2015-04-17 18:23 942 COILS output in CSV format
[ ]jp_9lz7HE1.coilseq.lupas_142015-04-17 18:23 6.4KCOILS output, window length 14
[ ]jp_9lz7HE1.coilseq.lupas_212015-04-17 18:23 6.4KCOILS output, window length 21
[ ]jp_9lz7HE1.coilseq.lupas_282015-04-17 18:23 6.4KCOILS output, window length 28
[ ]jp_9lz7HE1.concise2015-04-17 18:23 16KPrediction: coiled-coil, solvent, alignment
[ ]jp_9lz7HE1.concise.blc2015-04-17 18:23 7.3KBLC format prediction and alignment data
[ ]jp_9lz7HE1.concise.fasta2015-04-17 18:23 6.6KPrediction: coiled-coil, solvent, alignment
[ ]jp_9lz7HE1.concise.pdf2015-04-17 18:23 52KPDF prediction and alignment data
[ ]jp_9lz7HE1.concise.ps2015-04-17 18:23 890KPrediction: coiled-coil, solvent, alignment
[ ]jp_9lz7HE1.fasta2015-04-17 18:20 167 Input query sequence in FASTA format
[ ]jp_9lz7HE1.full_MSA.fasta2015-04-17 18:23 8.4KFull MSA before JPred filters in FASTA
[TXT]jp_9lz7HE1.full_MSA.fasta.noGaps.html2015-04-17 18:23 12KFull MSA before JPred filters in FASTA
[TXT]jp_9lz7HE1.full_MSA.fasta.withGaps.html2015-04-17 18:23 30KFull MSA before JPred filters in FASTA
[ ]jp_9lz7HE1.hmm2015-04-17 18:23 29KHHMer2 profile of the alignment
[TXT]jp_9lz7HE1.html2015-04-17 18:23 28KHTML prediction and alignment data
[ ]jp_9lz7HE1.input2015-04-17 17:15 159 Raw input data for analysis
[ ]jp_9lz7HE1.jalview2015-04-17 18:23 3.9KJalview annotation file for alignment
[ ]jp_9lz7HE1.jnet2015-04-17 18:23 5.6KJnet secondary structure output
[TXT]jp_9lz7HE1.profile2015-04-17 18:22 25KPSIBLAST profile from alignment
[ ]jp_9lz7HE1.pssm2015-04-17 18:23 33KPSIBLAST PSSM for Jnet
[TXT]jp_9lz7HE1.results.html2016-02-15 12:17 72KJPred results page
[TXT]jp_9lz7HE1.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_9lz7HE1.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_9lz7HE1.seq2015-04-17 17:15 167 Sequence data file
[TXT]jp_9lz7HE1.simple.html2015-04-17 18:23 1.5KBrief HTML: sequence and prediction only
[TXT]jp_9lz7HE1.svg.html2015-04-17 18:23 63KJalview SVG summary of results
[ ]jp_9lz7HE1.tar.gz2015-04-17 18:23 116KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.