A Protein Secondary Structure Prediction Server
| Name | Last modified | Size | Description | |
|---|---|---|---|---|
![[TXT]](/icons/text.gif){kind=icon} | LOG | 2015-04-17 20:25 | 4.7K | JPred server log file |
| README | 2016-02-15 12:17 | 2.1K | Results file descriptions |
| d1kyfa1.name | 2015-04-17 18:26 | 0 | Job name flag file |
![[ ]](/icons/unknown.gif){kind=icon} | jp_nmmV_8R.align | 2015-04-17 20:24 | 41K | PSIBLAST alignment in FASTA format |
| jp_nmmV_8R.als | 2015-04-17 20:24 | 2.5K | Alscript command file for PS/PDF output |
![[ ]](/icons/compressed.gif){kind=icon} | jp_nmmV_8R.blast.gz | 2015-04-17 20:24 | 239K | Compressed PSIBLAST output file |
| jp_nmmV_8R.coils.csv | 2015-04-17 20:24 | 828 | COILS output in CSV format |
| jp_nmmV_8R.coilseq.lupas_14 | 2015-04-17 20:24 | 5.6K | COILS output, window length 14 |
| jp_nmmV_8R.coilseq.lupas_21 | 2015-04-17 20:24 | 5.6K | COILS output, window length 21 |
| jp_nmmV_8R.coilseq.lupas_28 | 2015-04-17 20:24 | 5.6K | COILS output, window length 28 |
| jp_nmmV_8R.concise | 2015-04-17 20:24 | 84K | Prediction: coiled-coil, solvent, alignment |
| jp_nmmV_8R.concise.blc | 2015-04-17 20:24 | 42K | BLC format prediction and alignment data |
| jp_nmmV_8R.concise.fasta | 2015-04-17 20:24 | 42K | Prediction: coiled-coil, solvent, alignment |
![[ ]](/icons/layout.gif){kind=icon} | jp_nmmV_8R.concise.pdf | 2015-04-17 20:24 | 299K | PDF prediction and alignment data |
| jp_nmmV_8R.concise.ps | 2015-04-17 20:24 | 5.0M | Prediction: coiled-coil, solvent, alignment |
| jp_nmmV_8R.fasta | 2015-04-17 20:19 | 147 | Input query sequence in FASTA format |
| jp_nmmV_8R.full_MSA.fasta | 2015-04-17 20:24 | 297K | Full MSA before JPred filters in FASTA |
| jp_nmmV_8R.full_MSA.fasta.noGaps.html | 2015-04-17 20:24 | 125K | Full MSA before JPred filters in FASTA |
| jp_nmmV_8R.full_MSA.fasta.withGaps.html | 2015-04-17 20:24 | 1.2M | Full MSA before JPred filters in FASTA |
| jp_nmmV_8R.hmm | 2015-04-17 20:24 | 25K | HHMer2 profile of the alignment |
| jp_nmmV_8R.html | 2015-04-17 20:24 | 107K | HTML prediction and alignment data |
| jp_nmmV_8R.input | 2015-04-17 18:26 | 140 | Raw input data for analysis |
| jp_nmmV_8R.jalview | 2015-04-17 20:24 | 3.5K | Jalview annotation file for alignment |
| jp_nmmV_8R.jnet | 2015-04-17 20:24 | 4.9K | Jnet secondary structure output |
| jp_nmmV_8R.profile | 2015-04-17 20:24 | 22K | PSIBLAST profile from alignment |
| jp_nmmV_8R.pssm | 2015-04-17 20:24 | 29K | PSIBLAST PSSM for Jnet |
| jp_nmmV_8R.results.html | 2016-02-15 12:17 | 61K | JPred results page |
| jp_nmmV_8R.results_jalview.html | 2016-02-24 17:17 | 13K | Jalview results options |
| jp_nmmV_8R.results_jalview_app.html | 2016-02-24 17:17 | 16K | HTML prediction and alignment data |
| jp_nmmV_8R.seq | 2015-04-17 18:26 | 147 | Sequence data file |
| jp_nmmV_8R.simple.html | 2015-04-17 20:24 | 1.3K | Brief HTML: sequence and prediction only |
![[TXT]](jp_nmmV_8R.svg.html) | jp_nmmV_8R.svg.html | 2015-04-17 20:24 | 53K | Jalview SVG summary of results |
| jp_nmmV_8R.tar.gz | 2015-04-17 20:25 | 759K | Archive containing complete results |
