JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:29 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1l0qa1.name2015-04-17 16:37 0 Job name flag file
[ ]jp_Iu9ZKzw.align2015-04-17 17:29 106KPSIBLAST alignment in FASTA format
[TXT]jp_Iu9ZKzw.als2015-04-17 17:29 2.1KAlscript command file for PS/PDF output
[ ]jp_Iu9ZKzw.blast.gz2015-04-17 17:28 3.4MCompressed PSIBLAST output file
[TXT]jp_Iu9ZKzw.coils.csv2015-04-17 17:29 570 COILS output in CSV format
[ ]jp_Iu9ZKzw.coilseq.lupas_142015-04-17 17:29 3.8KCOILS output, window length 14
[ ]jp_Iu9ZKzw.coilseq.lupas_212015-04-17 17:29 3.8KCOILS output, window length 21
[ ]jp_Iu9ZKzw.coilseq.lupas_282015-04-17 17:29 3.8KCOILS output, window length 28
[ ]jp_Iu9ZKzw.concise2015-04-17 17:29 202KPrediction: coiled-coil, solvent, alignment
[ ]jp_Iu9ZKzw.concise.blc2015-04-17 17:29 106KBLC format prediction and alignment data
[ ]jp_Iu9ZKzw.concise.fasta2015-04-17 17:29 107KPrediction: coiled-coil, solvent, alignment
[ ]jp_Iu9ZKzw.concise.pdf2015-04-17 17:29 633KPDF prediction and alignment data
[ ]jp_Iu9ZKzw.concise.ps2015-04-17 17:29 11MPrediction: coiled-coil, solvent, alignment
[ ]jp_Iu9ZKzw.fasta2015-04-17 17:20 104 Input query sequence in FASTA format
[ ]jp_Iu9ZKzw.full_MSA.fasta2015-04-17 17:28 7.0MFull MSA before JPred filters in FASTA
[TXT]jp_Iu9ZKzw.full_MSA.fasta.noGaps.html2015-04-17 17:29 1.6MFull MSA before JPred filters in FASTA
[TXT]jp_Iu9ZKzw.full_MSA.fasta.withGaps.html2015-04-17 17:29 23MFull MSA before JPred filters in FASTA
[ ]jp_Iu9ZKzw.hmm2015-04-17 17:29 17KHHMer2 profile of the alignment
[TXT]jp_Iu9ZKzw.html2015-04-17 17:29 302KHTML prediction and alignment data
[ ]jp_Iu9ZKzw.input2015-04-17 16:37 97 Raw input data for analysis
[ ]jp_Iu9ZKzw.jalview2015-04-17 17:29 2.6KJalview annotation file for alignment
[ ]jp_Iu9ZKzw.jnet2015-04-17 17:29 3.4KJnet secondary structure output
[TXT]jp_Iu9ZKzw.profile2015-04-17 17:25 15KPSIBLAST profile from alignment
[ ]jp_Iu9ZKzw.pssm2015-04-17 17:29 19KPSIBLAST PSSM for Jnet
[TXT]jp_Iu9ZKzw.results.html2016-02-15 12:17 45KJPred results page
[TXT]jp_Iu9ZKzw.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_Iu9ZKzw.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_Iu9ZKzw.seq2015-04-17 16:37 104 Sequence data file
[TXT]jp_Iu9ZKzw.simple.html2015-04-17 17:29 1.2KBrief HTML: sequence and prediction only
[TXT]jp_Iu9ZKzw.svg.html2015-04-17 17:29 37KJalview SVG summary of results
[ ]jp_Iu9ZKzw.tar.gz2015-04-17 17:29 6.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.