JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:24 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1l9la_.name2015-04-17 17:51 0 Job name flag file
[ ]jp__sUo8BY.align2015-04-17 19:24 63KPSIBLAST alignment in FASTA format
[TXT]jp__sUo8BY.als2015-04-17 19:24 1.8KAlscript command file for PS/PDF output
[ ]jp__sUo8BY.blast.gz2015-04-17 19:24 75KCompressed PSIBLAST output file
[TXT]jp__sUo8BY.coils.csv2015-04-17 19:24 474 COILS output in CSV format
[ ]jp__sUo8BY.coilseq.lupas_142015-04-17 19:24 3.1KCOILS output, window length 14
[ ]jp__sUo8BY.coilseq.lupas_212015-04-17 19:24 3.1KCOILS output, window length 21
[ ]jp__sUo8BY.coilseq.lupas_282015-04-17 19:24 3.1KCOILS output, window length 28
[ ]jp__sUo8BY.concise2015-04-17 19:24 121KPrediction: coiled-coil, solvent, alignment
[ ]jp__sUo8BY.concise.blc2015-04-17 19:24 63KBLC format prediction and alignment data
[ ]jp__sUo8BY.concise.fasta2015-04-17 19:24 65KPrediction: coiled-coil, solvent, alignment
[ ]jp__sUo8BY.concise.pdf2015-04-17 19:24 358KPDF prediction and alignment data
[ ]jp__sUo8BY.concise.ps2015-04-17 19:24 6.7MPrediction: coiled-coil, solvent, alignment
[ ]jp__sUo8BY.fasta2015-04-17 19:22 88 Input query sequence in FASTA format
[ ]jp__sUo8BY.full_MSA.fasta2015-04-17 19:24 171KFull MSA before JPred filters in FASTA
[TXT]jp__sUo8BY.full_MSA.fasta.noGaps.html2015-04-17 19:24 200KFull MSA before JPred filters in FASTA
[TXT]jp__sUo8BY.full_MSA.fasta.withGaps.html2015-04-17 19:24 1.2MFull MSA before JPred filters in FASTA
[ ]jp__sUo8BY.hmm2015-04-17 19:24 14KHHMer2 profile of the alignment
[TXT]jp__sUo8BY.html2015-04-17 19:24 204KHTML prediction and alignment data
[ ]jp__sUo8BY.input2015-04-17 17:51 81 Raw input data for analysis
[ ]jp__sUo8BY.jalview2015-04-17 19:24 2.3KJalview annotation file for alignment
[ ]jp__sUo8BY.jnet2015-04-17 19:24 2.8KJnet secondary structure output
[TXT]jp__sUo8BY.profile2015-04-17 19:23 12KPSIBLAST profile from alignment
[ ]jp__sUo8BY.pssm2015-04-17 19:24 16KPSIBLAST PSSM for Jnet
[TXT]jp__sUo8BY.results.html2016-02-15 12:17 41KJPred results page
[TXT]jp__sUo8BY.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp__sUo8BY.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp__sUo8BY.seq2015-04-17 17:51 88 Sequence data file
[TXT]jp__sUo8BY.simple.html2015-04-17 19:24 1.1KBrief HTML: sequence and prediction only
[TXT]jp__sUo8BY.svg.html2015-04-17 19:24 33KJalview SVG summary of results
[ ]jp__sUo8BY.tar.gz2015-04-17 19:24 640KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.