JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:23 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1lg7a_.name2015-04-17 17:16 0 Job name flag file
[ ]jp_ot12nt_.align2015-04-17 18:23 2.3KPSIBLAST alignment in FASTA format
[TXT]jp_ot12nt_.als2015-04-17 18:23 2.7KAlscript command file for PS/PDF output
[ ]jp_ot12nt_.blast.gz2015-04-17 18:23 4.9KCompressed PSIBLAST output file
[TXT]jp_ot12nt_.coils.csv2015-04-17 18:23 1.0KCOILS output in CSV format
[ ]jp_ot12nt_.coilseq.lupas_142015-04-17 18:23 6.9KCOILS output, window length 14
[ ]jp_ot12nt_.coilseq.lupas_212015-04-17 18:23 6.9KCOILS output, window length 21
[ ]jp_ot12nt_.coilseq.lupas_282015-04-17 18:23 6.9KCOILS output, window length 28
[ ]jp_ot12nt_.concise2015-04-17 18:23 11KPrediction: coiled-coil, solvent, alignment
[ ]jp_ot12nt_.concise.blc2015-04-17 18:23 4.8KBLC format prediction and alignment data
[ ]jp_ot12nt_.concise.fasta2015-04-17 18:23 4.1KPrediction: coiled-coil, solvent, alignment
[ ]jp_ot12nt_.concise.pdf2015-04-17 18:23 33KPDF prediction and alignment data
[ ]jp_ot12nt_.concise.ps2015-04-17 18:23 563KPrediction: coiled-coil, solvent, alignment
[ ]jp_ot12nt_.fasta2015-04-17 18:22 179 Input query sequence in FASTA format
[ ]jp_ot12nt_.full_MSA.fasta2015-04-17 18:23 3.8KFull MSA before JPred filters in FASTA
[TXT]jp_ot12nt_.full_MSA.fasta.noGaps.html2015-04-17 18:23 4.9KFull MSA before JPred filters in FASTA
[TXT]jp_ot12nt_.full_MSA.fasta.withGaps.html2015-04-17 18:23 9.2KFull MSA before JPred filters in FASTA
[ ]jp_ot12nt_.hmm2015-04-17 18:23 31KHHMer2 profile of the alignment
[TXT]jp_ot12nt_.html2015-04-17 18:23 22KHTML prediction and alignment data
[ ]jp_ot12nt_.input2015-04-17 17:16 171 Raw input data for analysis
[ ]jp_ot12nt_.jalview2015-04-17 18:23 4.1KJalview annotation file for alignment
[ ]jp_ot12nt_.jnet2015-04-17 18:23 6.0KJnet secondary structure output
[TXT]jp_ot12nt_.profile2015-04-17 18:23 26KPSIBLAST profile from alignment
[ ]jp_ot12nt_.pssm2015-04-17 18:23 35KPSIBLAST PSSM for Jnet
[TXT]jp_ot12nt_.results.html2016-02-15 12:17 74KJPred results page
[TXT]jp_ot12nt_.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_ot12nt_.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_ot12nt_.seq2015-04-17 17:16 179 Sequence data file
[TXT]jp_ot12nt_.simple.html2015-04-17 18:23 1.4KBrief HTML: sequence and prediction only
[TXT]jp_ot12nt_.svg.html2015-04-17 18:23 66KJalview SVG summary of results
[ ]jp_ot12nt_.tar.gz2015-04-17 18:23 84KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.