JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:17 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1lpba1.name2015-04-17 16:01 0 Job name flag file
[ ]jp_V79bI3V.align2015-04-17 17:16 1.9KPSIBLAST alignment in FASTA format
[TXT]jp_V79bI3V.als2015-04-17 17:16 1.5KAlscript command file for PS/PDF output
[ ]jp_V79bI3V.blast.gz2015-04-17 17:16 5.8KCompressed PSIBLAST output file
[TXT]jp_V79bI3V.coils.csv2015-04-17 17:16 264 COILS output in CSV format
[ ]jp_V79bI3V.coilseq.lupas_142015-04-17 17:16 1.6KCOILS output, window length 14
[ ]jp_V79bI3V.coilseq.lupas_212015-04-17 17:16 1.6KCOILS output, window length 21
[ ]jp_V79bI3V.coilseq.lupas_282015-04-17 17:16 1.6KCOILS output, window length 28
[ ]jp_V79bI3V.concise2015-04-17 17:16 5.2KPrediction: coiled-coil, solvent, alignment
[ ]jp_V79bI3V.concise.blc2015-04-17 17:16 2.5KBLC format prediction and alignment data
[ ]jp_V79bI3V.concise.fasta2015-04-17 17:16 2.4KPrediction: coiled-coil, solvent, alignment
[ ]jp_V79bI3V.concise.pdf2015-04-17 17:16 14KPDF prediction and alignment data
[ ]jp_V79bI3V.concise.ps2015-04-17 17:16 231KPrediction: coiled-coil, solvent, alignment
[ ]jp_V79bI3V.fasta2015-04-17 16:20 52 Input query sequence in FASTA format
[ ]jp_V79bI3V.full_MSA.fasta2015-04-17 17:16 4.3KFull MSA before JPred filters in FASTA
[TXT]jp_V79bI3V.full_MSA.fasta.noGaps.html2015-04-17 17:16 13KFull MSA before JPred filters in FASTA
[TXT]jp_V79bI3V.full_MSA.fasta.withGaps.html2015-04-17 17:16 13KFull MSA before JPred filters in FASTA
[ ]jp_V79bI3V.hmm2015-04-17 17:16 7.3KHHMer2 profile of the alignment
[TXT]jp_V79bI3V.html2015-04-17 17:16 12KHTML prediction and alignment data
[ ]jp_V79bI3V.input2015-04-17 16:01 46 Raw input data for analysis
[ ]jp_V79bI3V.jalview2015-04-17 17:16 1.6KJalview annotation file for alignment
[ ]jp_V79bI3V.jnet2015-04-17 17:16 1.5KJnet secondary structure output
[TXT]jp_V79bI3V.profile2015-04-17 16:46 6.7KPSIBLAST profile from alignment
[ ]jp_V79bI3V.pssm2015-04-17 17:16 8.4KPSIBLAST PSSM for Jnet
[TXT]jp_V79bI3V.results.html2016-02-15 12:17 26KJPred results page
[TXT]jp_V79bI3V.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_V79bI3V.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_V79bI3V.seq2015-04-17 16:01 52 Sequence data file
[TXT]jp_V79bI3V.simple.html2015-04-17 17:16 1.0KBrief HTML: sequence and prediction only
[TXT]jp_V79bI3V.svg.html2015-04-17 17:17 18KJalview SVG summary of results
[ ]jp_V79bI3V.tar.gz2015-04-17 17:17 38KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.