JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:21 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1lrza1.name2015-04-17 16:00 0 Job name flag file
[ ]jp_tcUHY4h.align2015-04-17 16:21 156 PSIBLAST alignment in FASTA format
[TXT]jp_tcUHY4h.als2015-04-17 16:21 1.6KAlscript command file for PS/PDF output
[ ]jp_tcUHY4h.blast.gz2015-04-17 16:21 1.8KCompressed PSIBLAST output file
[TXT]jp_tcUHY4h.coils.csv2015-04-17 16:21 420 COILS output in CSV format
[ ]jp_tcUHY4h.coilseq.lupas_142015-04-17 16:21 2.7KCOILS output, window length 14
[ ]jp_tcUHY4h.coilseq.lupas_212015-04-17 16:21 2.7KCOILS output, window length 21
[ ]jp_tcUHY4h.coilseq.lupas_282015-04-17 16:21 2.7KCOILS output, window length 28
[ ]jp_tcUHY4h.concise2015-04-17 16:21 3.2KPrediction: coiled-coil, solvent, alignment
[ ]jp_tcUHY4h.concise.blc2015-04-17 16:21 1.2KBLC format prediction and alignment data
[ ]jp_tcUHY4h.concise.fasta2015-04-17 16:21 916 Prediction: coiled-coil, solvent, alignment
[ ]jp_tcUHY4h.concise.pdf2015-04-17 16:21 9.4KPDF prediction and alignment data
[ ]jp_tcUHY4h.concise.ps2015-04-17 16:21 138KPrediction: coiled-coil, solvent, alignment
[ ]jp_tcUHY4h.fasta2015-04-17 16:19 78 Input query sequence in FASTA format
[ ]jp_tcUHY4h.full_MSA.fasta2015-04-17 16:21 239 Full MSA before JPred filters in FASTA
[TXT]jp_tcUHY4h.full_MSA.fasta.noGaps.html2015-04-17 16:21 678 Full MSA before JPred filters in FASTA
[TXT]jp_tcUHY4h.full_MSA.fasta.withGaps.html2015-04-17 16:21 678 Full MSA before JPred filters in FASTA
[ ]jp_tcUHY4h.hmm2015-04-17 16:21 12KHHMer2 profile of the alignment
[TXT]jp_tcUHY4h.html2015-04-17 16:21 9.5KHTML prediction and alignment data
[ ]jp_tcUHY4h.input2015-04-17 16:00 72 Raw input data for analysis
[ ]jp_tcUHY4h.jalview2015-04-17 16:21 2.1KJalview annotation file for alignment
[ ]jp_tcUHY4h.jnet2015-04-17 16:21 2.5KJnet secondary structure output
[TXT]jp_tcUHY4h.profile2015-04-17 16:20 11KPSIBLAST profile from alignment
[ ]jp_tcUHY4h.pssm2015-04-17 16:21 14KPSIBLAST PSSM for Jnet
[TXT]jp_tcUHY4h.results.html2016-02-15 12:17 36KJPred results page
[TXT]jp_tcUHY4h.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_tcUHY4h.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_tcUHY4h.seq2015-04-17 16:00 78 Sequence data file
[TXT]jp_tcUHY4h.simple.html2015-04-17 16:21 1.0KBrief HTML: sequence and prediction only
[TXT]jp_tcUHY4h.svg.html2015-04-17 16:21 28KJalview SVG summary of results
[ ]jp_tcUHY4h.tar.gz2015-04-17 16:21 27KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.