JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:29 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1m1ha1.name2015-04-17 19:05 0 Job name flag file
[ ]jp_GewyFtP.align2015-04-17 21:29 57KPSIBLAST alignment in FASTA format
[TXT]jp_GewyFtP.als2015-04-17 21:29 2.3KAlscript command file for PS/PDF output
[ ]jp_GewyFtP.blast.gz2015-04-17 21:29 82KCompressed PSIBLAST output file
[TXT]jp_GewyFtP.coils.csv2015-04-17 21:29 516 COILS output in CSV format
[ ]jp_GewyFtP.coilseq.lupas_142015-04-17 21:29 3.4KCOILS output, window length 14
[ ]jp_GewyFtP.coilseq.lupas_212015-04-17 21:29 3.4KCOILS output, window length 21
[ ]jp_GewyFtP.coilseq.lupas_282015-04-17 21:29 3.4KCOILS output, window length 28
[ ]jp_GewyFtP.concise2015-04-17 21:29 110KPrediction: coiled-coil, solvent, alignment
[ ]jp_GewyFtP.concise.blc2015-04-17 21:29 57KBLC format prediction and alignment data
[ ]jp_GewyFtP.concise.fasta2015-04-17 21:29 58KPrediction: coiled-coil, solvent, alignment
[ ]jp_GewyFtP.concise.pdf2015-04-17 21:29 374KPDF prediction and alignment data
[ ]jp_GewyFtP.concise.ps2015-04-17 21:29 6.3MPrediction: coiled-coil, solvent, alignment
[ ]jp_GewyFtP.fasta2015-04-17 21:23 95 Input query sequence in FASTA format
[ ]jp_GewyFtP.full_MSA.fasta2015-04-17 21:29 252KFull MSA before JPred filters in FASTA
[TXT]jp_GewyFtP.full_MSA.fasta.noGaps.html2015-04-17 21:29 153KFull MSA before JPred filters in FASTA
[TXT]jp_GewyFtP.full_MSA.fasta.withGaps.html2015-04-17 21:29 1.2MFull MSA before JPred filters in FASTA
[ ]jp_GewyFtP.hmm2015-04-17 21:29 15KHHMer2 profile of the alignment
[TXT]jp_GewyFtP.html2015-04-17 21:29 176KHTML prediction and alignment data
[ ]jp_GewyFtP.input2015-04-17 19:05 88 Raw input data for analysis
[ ]jp_GewyFtP.jalview2015-04-17 21:29 2.4KJalview annotation file for alignment
[ ]jp_GewyFtP.jnet2015-04-17 21:29 3.0KJnet secondary structure output
[TXT]jp_GewyFtP.profile2015-04-17 21:27 13KPSIBLAST profile from alignment
[ ]jp_GewyFtP.pssm2015-04-17 21:29 17KPSIBLAST PSSM for Jnet
[TXT]jp_GewyFtP.results.html2016-02-15 12:17 42KJPred results page
[TXT]jp_GewyFtP.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_GewyFtP.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_GewyFtP.seq2015-04-17 19:05 95 Sequence data file
[TXT]jp_GewyFtP.simple.html2015-04-17 21:29 1.2KBrief HTML: sequence and prediction only
[TXT]jp_GewyFtP.svg.html2015-04-17 21:29 34KJalview SVG summary of results
[ ]jp_GewyFtP.tar.gz2015-04-17 21:29 689KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.