JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:22 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1m55a_.name2015-04-17 16:01 0 Job name flag file
[ ]jp_ebsMquO.align2015-04-17 16:22 6.9KPSIBLAST alignment in FASTA format
[TXT]jp_ebsMquO.als2015-04-17 16:22 2.7KAlscript command file for PS/PDF output
[ ]jp_ebsMquO.blast.gz2015-04-17 16:22 15KCompressed PSIBLAST output file
[TXT]jp_ebsMquO.coils.csv2015-04-17 16:22 1.2KCOILS output in CSV format
[ ]jp_ebsMquO.coilseq.lupas_142015-04-17 16:22 8.1KCOILS output, window length 14
[ ]jp_ebsMquO.coilseq.lupas_212015-04-17 16:22 8.1KCOILS output, window length 21
[ ]jp_ebsMquO.coilseq.lupas_282015-04-17 16:22 8.1KCOILS output, window length 28
[ ]jp_ebsMquO.concise2015-04-17 16:22 21KPrediction: coiled-coil, solvent, alignment
[ ]jp_ebsMquO.concise.blc2015-04-17 16:22 9.7KBLC format prediction and alignment data
[ ]jp_ebsMquO.concise.fasta2015-04-17 16:22 8.9KPrediction: coiled-coil, solvent, alignment
[ ]jp_ebsMquO.concise.pdf2015-04-17 16:22 67KPDF prediction and alignment data
[ ]jp_ebsMquO.concise.ps2015-04-17 16:22 1.1MPrediction: coiled-coil, solvent, alignment
[ ]jp_ebsMquO.fasta2015-04-17 16:20 208 Input query sequence in FASTA format
[ ]jp_ebsMquO.full_MSA.fasta2015-04-17 16:22 21KFull MSA before JPred filters in FASTA
[TXT]jp_ebsMquO.full_MSA.fasta.noGaps.html2015-04-17 16:22 15KFull MSA before JPred filters in FASTA
[TXT]jp_ebsMquO.full_MSA.fasta.withGaps.html2015-04-17 16:22 91KFull MSA before JPred filters in FASTA
[ ]jp_ebsMquO.hmm2015-04-17 16:22 36KHHMer2 profile of the alignment
[TXT]jp_ebsMquO.html2015-04-17 16:22 32KHTML prediction and alignment data
[ ]jp_ebsMquO.input2015-04-17 16:01 200 Raw input data for analysis
[ ]jp_ebsMquO.jalview2015-04-17 16:22 4.7KJalview annotation file for alignment
[ ]jp_ebsMquO.jnet2015-04-17 16:22 7.1KJnet secondary structure output
[TXT]jp_ebsMquO.profile2015-04-17 16:21 31KPSIBLAST profile from alignment
[ ]jp_ebsMquO.pssm2015-04-17 16:22 41KPSIBLAST PSSM for Jnet
[TXT]jp_ebsMquO.results.html2016-02-15 12:17 85KJPred results page
[TXT]jp_ebsMquO.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_ebsMquO.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_ebsMquO.seq2015-04-17 16:01 208 Sequence data file
[TXT]jp_ebsMquO.simple.html2015-04-17 16:22 1.5KBrief HTML: sequence and prediction only
[TXT]jp_ebsMquO.svg.html2015-04-17 16:22 77KJalview SVG summary of results
[ ]jp_ebsMquO.tar.gz2015-04-17 16:22 157KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.