JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:28 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1m56d_.name2015-04-17 19:05 0 Job name flag file
[ ]jp_XdFm2NH.align2015-04-17 21:28 481 PSIBLAST alignment in FASTA format
[TXT]jp_XdFm2NH.als2015-04-17 21:28 1.3KAlscript command file for PS/PDF output
[ ]jp_XdFm2NH.blast.gz2015-04-17 21:28 2.1KCompressed PSIBLAST output file
[TXT]jp_XdFm2NH.coils.csv2015-04-17 21:28 282 COILS output in CSV format
[ ]jp_XdFm2NH.coilseq.lupas_142015-04-17 21:28 1.8KCOILS output, window length 14
[ ]jp_XdFm2NH.coilseq.lupas_212015-04-17 21:28 1.8KCOILS output, window length 21
[ ]jp_XdFm2NH.coilseq.lupas_282015-04-17 21:28 1.8KCOILS output, window length 28
[ ]jp_XdFm2NH.concise2015-04-17 21:28 2.7KPrediction: coiled-coil, solvent, alignment
[ ]jp_XdFm2NH.concise.blc2015-04-17 21:28 1.2KBLC format prediction and alignment data
[ ]jp_XdFm2NH.concise.fasta2015-04-17 21:28 1.0KPrediction: coiled-coil, solvent, alignment
[ ]jp_XdFm2NH.concise.pdf2015-04-17 21:28 9.2KPDF prediction and alignment data
[ ]jp_XdFm2NH.concise.ps2015-04-17 21:28 124KPrediction: coiled-coil, solvent, alignment
[ ]jp_XdFm2NH.fasta2015-04-17 21:24 55 Input query sequence in FASTA format
[ ]jp_XdFm2NH.full_MSA.fasta2015-04-17 21:28 541 Full MSA before JPred filters in FASTA
[TXT]jp_XdFm2NH.full_MSA.fasta.noGaps.html2015-04-17 21:28 1.7KFull MSA before JPred filters in FASTA
[TXT]jp_XdFm2NH.full_MSA.fasta.withGaps.html2015-04-17 21:28 1.7KFull MSA before JPred filters in FASTA
[ ]jp_XdFm2NH.hmm2015-04-17 21:28 7.9KHHMer2 profile of the alignment
[TXT]jp_XdFm2NH.html2015-04-17 21:28 8.7KHTML prediction and alignment data
[ ]jp_XdFm2NH.input2015-04-17 19:05 49 Raw input data for analysis
[ ]jp_XdFm2NH.jalview2015-04-17 21:28 1.7KJalview annotation file for alignment
[ ]jp_XdFm2NH.jnet2015-04-17 21:28 1.6KJnet secondary structure output
[TXT]jp_XdFm2NH.profile2015-04-17 21:26 7.2KPSIBLAST profile from alignment
[ ]jp_XdFm2NH.pssm2015-04-17 21:28 9.0KPSIBLAST PSSM for Jnet
[TXT]jp_XdFm2NH.results.html2016-02-15 12:17 27KJPred results page
[TXT]jp_XdFm2NH.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_XdFm2NH.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_XdFm2NH.seq2015-04-17 19:05 55 Sequence data file
[TXT]jp_XdFm2NH.simple.html2015-04-17 21:28 965 Brief HTML: sequence and prediction only
[TXT]jp_XdFm2NH.svg.html2015-04-17 21:28 19KJalview SVG summary of results
[ ]jp_XdFm2NH.tar.gz2015-04-17 21:28 26KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.