JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:25 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1mkfa_.name2015-04-17 17:52 0 Job name flag file
[ ]jp_R5d7hnU.align2015-04-17 19:24 778 PSIBLAST alignment in FASTA format
[TXT]jp_R5d7hnU.als2015-04-17 19:24 4.8KAlscript command file for PS/PDF output
[ ]jp_R5d7hnU.blast.gz2015-04-17 19:24 2.3KCompressed PSIBLAST output file
[TXT]jp_R5d7hnU.coils.csv2015-04-17 19:24 2.2KCOILS output in CSV format
[ ]jp_R5d7hnU.coilseq.lupas_142015-04-17 19:24 16KCOILS output, window length 14
[ ]jp_R5d7hnU.coilseq.lupas_212015-04-17 19:24 16KCOILS output, window length 21
[ ]jp_R5d7hnU.coilseq.lupas_282015-04-17 19:24 16KCOILS output, window length 28
[ ]jp_R5d7hnU.concise2015-04-17 19:24 17KPrediction: coiled-coil, solvent, alignment
[ ]jp_R5d7hnU.concise.blc2015-04-17 19:24 6.3KBLC format prediction and alignment data
[ ]jp_R5d7hnU.concise.fasta2015-04-17 19:24 4.5KPrediction: coiled-coil, solvent, alignment
[ ]jp_R5d7hnU.concise.pdf2015-04-17 19:24 35KPDF prediction and alignment data
[ ]jp_R5d7hnU.concise.ps2015-04-17 19:24 680KPrediction: coiled-coil, solvent, alignment
[ ]jp_R5d7hnU.fasta2015-04-17 19:22 389 Input query sequence in FASTA format
[ ]jp_R5d7hnU.full_MSA.fasta2015-04-17 19:24 1.2KFull MSA before JPred filters in FASTA
[TXT]jp_R5d7hnU.full_MSA.fasta.noGaps.html2015-04-17 19:24 1.3KFull MSA before JPred filters in FASTA
[TXT]jp_R5d7hnU.full_MSA.fasta.withGaps.html2015-04-17 19:24 1.6KFull MSA before JPred filters in FASTA
[ ]jp_R5d7hnU.hmm2015-04-17 19:24 70KHHMer2 profile of the alignment
[TXT]jp_R5d7hnU.html2015-04-17 19:24 30KHTML prediction and alignment data
[ ]jp_R5d7hnU.input2015-04-17 17:52 378 Raw input data for analysis
[ ]jp_R5d7hnU.jalview2015-04-17 19:24 8.1KJalview annotation file for alignment
[ ]jp_R5d7hnU.jnet2015-04-17 19:24 14KJnet secondary structure output
[TXT]jp_R5d7hnU.profile2015-04-17 19:23 59KPSIBLAST profile from alignment
[ ]jp_R5d7hnU.pssm2015-04-17 19:24 80KPSIBLAST PSSM for Jnet
[TXT]jp_R5d7hnU.results.html2016-02-15 12:17 155KJPred results page
[TXT]jp_R5d7hnU.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_R5d7hnU.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_R5d7hnU.seq2015-04-17 17:52 389 Sequence data file
[TXT]jp_R5d7hnU.simple.html2015-04-17 19:24 2.2KBrief HTML: sequence and prediction only
[TXT]jp_R5d7hnU.svg.html2015-04-17 19:24 147KJalview SVG summary of results
[ ]jp_R5d7hnU.tar.gz2015-04-17 19:25 97KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.