JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:00 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1mwqa_.name2015-04-17 18:27 0 Job name flag file
[ ]jp_HIAwS_R.align2015-04-17 20:59 131KPSIBLAST alignment in FASTA format
[TXT]jp_HIAwS_R.als2015-04-17 20:59 2.2KAlscript command file for PS/PDF output
[ ]jp_HIAwS_R.blast.gz2015-04-17 20:58 730KCompressed PSIBLAST output file
[TXT]jp_HIAwS_R.coils.csv2015-04-17 20:59 624 COILS output in CSV format
[ ]jp_HIAwS_R.coilseq.lupas_142015-04-17 20:59 4.2KCOILS output, window length 14
[ ]jp_HIAwS_R.coilseq.lupas_212015-04-17 20:59 4.2KCOILS output, window length 21
[ ]jp_HIAwS_R.coilseq.lupas_282015-04-17 20:59 4.2KCOILS output, window length 28
[ ]jp_HIAwS_R.concise2015-04-17 20:59 251KPrediction: coiled-coil, solvent, alignment
[ ]jp_HIAwS_R.concise.blc2015-04-17 20:59 130KBLC format prediction and alignment data
[ ]jp_HIAwS_R.concise.fasta2015-04-17 20:59 132KPrediction: coiled-coil, solvent, alignment
[ ]jp_HIAwS_R.concise.pdf2015-04-17 20:59 821KPDF prediction and alignment data
[ ]jp_HIAwS_R.concise.ps2015-04-17 20:59 14MPrediction: coiled-coil, solvent, alignment
[ ]jp_HIAwS_R.fasta2015-04-17 20:21 113 Input query sequence in FASTA format
[ ]jp_HIAwS_R.full_MSA.fasta2015-04-17 20:58 1.5MFull MSA before JPred filters in FASTA
[TXT]jp_HIAwS_R.full_MSA.fasta.noGaps.html2015-04-17 20:59 658KFull MSA before JPred filters in FASTA
[TXT]jp_HIAwS_R.full_MSA.fasta.withGaps.html2015-04-17 20:59 7.1MFull MSA before JPred filters in FASTA
[ ]jp_HIAwS_R.hmm2015-04-17 20:59 19KHHMer2 profile of the alignment
[TXT]jp_HIAwS_R.html2015-04-17 20:59 356KHTML prediction and alignment data
[ ]jp_HIAwS_R.input2015-04-17 18:27 106 Raw input data for analysis
[ ]jp_HIAwS_R.jalview2015-04-17 20:59 2.8KJalview annotation file for alignment
[ ]jp_HIAwS_R.jnet2015-04-17 20:59 3.7KJnet secondary structure output
[TXT]jp_HIAwS_R.profile2015-04-17 20:57 16KPSIBLAST profile from alignment
[ ]jp_HIAwS_R.pssm2015-04-17 20:59 21KPSIBLAST PSSM for Jnet
[TXT]jp_HIAwS_R.results.html2016-02-15 12:17 50KJPred results page
[TXT]jp_HIAwS_R.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_HIAwS_R.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_HIAwS_R.seq2015-04-17 18:27 113 Sequence data file
[TXT]jp_HIAwS_R.simple.html2015-04-17 20:59 1.2KBrief HTML: sequence and prediction only
[TXT]jp_HIAwS_R.svg.html2015-04-17 21:00 41KJalview SVG summary of results
[ ]jp_HIAwS_R.tar.gz2015-04-17 21:00 2.4MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.