JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[ ]jp_0ipMqQY.input2015-04-17 16:03 342 Raw input data for analysis
[ ]jp_0ipMqQY.seq2015-04-17 16:03 352 Sequence data file
[TXT]d1n93x_.name2015-04-17 16:03 0 Job name flag file
[ ]jp_0ipMqQY.fasta2015-04-17 16:23 352 Input query sequence in FASTA format
[TXT]jp_0ipMqQY.profile2015-04-17 16:34 54KPSIBLAST profile from alignment
[ ]jp_0ipMqQY.blast.gz2015-04-17 16:40 16KCompressed PSIBLAST output file
[ ]jp_0ipMqQY.full_MSA.fasta2015-04-17 16:40 20KFull MSA before JPred filters in FASTA
[ ]jp_0ipMqQY.align2015-04-17 16:40 4.5KPSIBLAST alignment in FASTA format
[ ]jp_0ipMqQY.pssm2015-04-17 16:40 72KPSIBLAST PSSM for Jnet
[ ]jp_0ipMqQY.hmm2015-04-17 16:40 63KHHMer2 profile of the alignment
[ ]jp_0ipMqQY.jnet2015-04-17 16:40 12KJnet secondary structure output
[ ]jp_0ipMqQY.coilseq.lupas_212015-04-17 16:40 14KCOILS output, window length 21
[ ]jp_0ipMqQY.coilseq.lupas_142015-04-17 16:40 14KCOILS output, window length 14
[ ]jp_0ipMqQY.coilseq.lupas_282015-04-17 16:40 14KCOILS output, window length 28
[TXT]jp_0ipMqQY.coils.csv2015-04-17 16:40 2.0KCOILS output in CSV format
[ ]jp_0ipMqQY.concise2015-04-17 16:40 23KPrediction: coiled-coil, solvent, alignment
[TXT]jp_0ipMqQY.html2015-04-17 16:40 37KHTML prediction and alignment data
[TXT]jp_0ipMqQY.simple.html2015-04-17 16:40 2.1KBrief HTML: sequence and prediction only
[ ]jp_0ipMqQY.jalview2015-04-17 16:40 7.6KJalview annotation file for alignment
[ ]jp_0ipMqQY.concise.fasta2015-04-17 16:40 8.0KPrediction: coiled-coil, solvent, alignment
[ ]jp_0ipMqQY.concise.blc2015-04-17 16:40 9.5KBLC format prediction and alignment data
[TXT]jp_0ipMqQY.als2015-04-17 16:40 4.3KAlscript command file for PS/PDF output
[ ]jp_0ipMqQY.concise.ps2015-04-17 16:40 1.1MPrediction: coiled-coil, solvent, alignment
[ ]jp_0ipMqQY.concise.pdf2015-04-17 16:40 61KPDF prediction and alignment data
[TXT]jp_0ipMqQY.full_MSA.fasta.withGaps.html2015-04-17 16:40 49KFull MSA before JPred filters in FASTA
[TXT]jp_0ipMqQY.full_MSA.fasta.noGaps.html2015-04-17 16:40 20KFull MSA before JPred filters in FASTA
[TXT]jp_0ipMqQY.svg.html2015-04-17 16:40 136KJalview SVG summary of results
[TXT]LOG2015-04-17 16:40 4.7KJPred server log file
[ ]jp_0ipMqQY.tar.gz2015-04-17 16:40 158KArchive containing complete results
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]jp_0ipMqQY.results.html2016-02-15 12:17 144KJPred results page
[TXT]jp_0ipMqQY.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_0ipMqQY.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.