JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:30 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1ng6a_.name2015-04-17 15:25 0 Job name flag file
[ ]jp_oX4r778.align2015-04-17 15:30 158KPSIBLAST alignment in FASTA format
[TXT]jp_oX4r778.als2015-04-17 15:30 2.2KAlscript command file for PS/PDF output
[ ]jp_oX4r778.blast.gz2015-04-17 15:29 1.3MCompressed PSIBLAST output file
[TXT]jp_oX4r778.coils.csv2015-04-17 15:30 918 COILS output in CSV format
[ ]jp_oX4r778.coilseq.lupas_142015-04-17 15:30 6.2KCOILS output, window length 14
[ ]jp_oX4r778.coilseq.lupas_212015-04-17 15:30 6.2KCOILS output, window length 21
[ ]jp_oX4r778.coilseq.lupas_282015-04-17 15:30 6.2KCOILS output, window length 28
[ ]jp_oX4r778.concise2015-04-17 15:30 308KPrediction: coiled-coil, solvent, alignment
[ ]jp_oX4r778.concise.blc2015-04-17 15:30 158KBLC format prediction and alignment data
[ ]jp_oX4r778.concise.fasta2015-04-17 15:30 160KPrediction: coiled-coil, solvent, alignment
[ ]jp_oX4r778.concise.pdf2015-04-17 15:30 1.0MPDF prediction and alignment data
[ ]jp_oX4r778.concise.ps2015-04-17 15:30 19MPrediction: coiled-coil, solvent, alignment
[ ]jp_oX4r778.fasta2015-04-17 15:25 163 Input query sequence in FASTA format
[ ]jp_oX4r778.full_MSA.fasta2015-04-17 15:29 2.1MFull MSA before JPred filters in FASTA
[TXT]jp_oX4r778.full_MSA.fasta.noGaps.html2015-04-17 15:30 718KFull MSA before JPred filters in FASTA
[TXT]jp_oX4r778.full_MSA.fasta.withGaps.html2015-04-17 15:30 9.2MFull MSA before JPred filters in FASTA
[ ]jp_oX4r778.hmm2015-04-17 15:30 28KHHMer2 profile of the alignment
[TXT]jp_oX4r778.html2015-04-17 15:30 358KHTML prediction and alignment data
[ ]jp_oX4r778.input2015-04-17 15:25 155 Raw input data for analysis
[ ]jp_oX4r778.jalview2015-04-17 15:30 3.9KJalview annotation file for alignment
[ ]jp_oX4r778.jnet2015-04-17 15:30 5.5KJnet secondary structure output
[TXT]jp_oX4r778.profile2015-04-17 15:28 24KPSIBLAST profile from alignment
[ ]jp_oX4r778.pssm2015-04-17 15:30 32KPSIBLAST PSSM for Jnet
[TXT]jp_oX4r778.results.html2016-02-15 12:17 68KJPred results page
[TXT]jp_oX4r778.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_oX4r778.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_oX4r778.seq2015-04-17 15:25 163 Sequence data file
[TXT]jp_oX4r778.simple.html2015-04-17 15:30 1.3KBrief HTML: sequence and prediction only
[TXT]jp_oX4r778.svg.html2015-04-17 15:30 60KJalview SVG summary of results
[ ]jp_oX4r778.tar.gz2015-04-17 15:30 3.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.