JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:30 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1nija2.name2015-04-17 17:52 0 Job name flag file
[ ]jp_s68YpeD.align2015-04-17 19:30 118KPSIBLAST alignment in FASTA format
[TXT]jp_s68YpeD.als2015-04-17 19:30 2.2KAlscript command file for PS/PDF output
[ ]jp_s68YpeD.blast.gz2015-04-17 19:29 2.2MCompressed PSIBLAST output file
[TXT]jp_s68YpeD.coils.csv2015-04-17 19:30 600 COILS output in CSV format
[ ]jp_s68YpeD.coilseq.lupas_142015-04-17 19:30 4.0KCOILS output, window length 14
[ ]jp_s68YpeD.coilseq.lupas_212015-04-17 19:30 4.0KCOILS output, window length 21
[ ]jp_s68YpeD.coilseq.lupas_282015-04-17 19:30 4.0KCOILS output, window length 28
[ ]jp_s68YpeD.concise2015-04-17 19:30 225KPrediction: coiled-coil, solvent, alignment
[ ]jp_s68YpeD.concise.blc2015-04-17 19:30 117KBLC format prediction and alignment data
[ ]jp_s68YpeD.concise.fasta2015-04-17 19:30 119KPrediction: coiled-coil, solvent, alignment
[ ]jp_s68YpeD.concise.pdf2015-04-17 19:30 764KPDF prediction and alignment data
[ ]jp_s68YpeD.concise.ps2015-04-17 19:30 13MPrediction: coiled-coil, solvent, alignment
[ ]jp_s68YpeD.fasta2015-04-17 19:23 109 Input query sequence in FASTA format
[ ]jp_s68YpeD.full_MSA.fasta2015-04-17 19:29 5.8MFull MSA before JPred filters in FASTA
[TXT]jp_s68YpeD.full_MSA.fasta.noGaps.html2015-04-17 19:30 893KFull MSA before JPred filters in FASTA
[TXT]jp_s68YpeD.full_MSA.fasta.withGaps.html2015-04-17 19:30 14MFull MSA before JPred filters in FASTA
[ ]jp_s68YpeD.hmm2015-04-17 19:30 18KHHMer2 profile of the alignment
[TXT]jp_s68YpeD.html2015-04-17 19:30 328KHTML prediction and alignment data
[ ]jp_s68YpeD.input2015-04-17 17:52 102 Raw input data for analysis
[ ]jp_s68YpeD.jalview2015-04-17 19:30 2.7KJalview annotation file for alignment
[ ]jp_s68YpeD.jnet2015-04-17 19:30 3.5KJnet secondary structure output
[TXT]jp_s68YpeD.profile2015-04-17 19:26 16KPSIBLAST profile from alignment
[ ]jp_s68YpeD.pssm2015-04-17 19:30 20KPSIBLAST PSSM for Jnet
[TXT]jp_s68YpeD.results.html2016-02-15 12:17 48KJPred results page
[TXT]jp_s68YpeD.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_s68YpeD.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_s68YpeD.seq2015-04-17 17:52 109 Sequence data file
[TXT]jp_s68YpeD.simple.html2015-04-17 19:30 1.2KBrief HTML: sequence and prediction only
[TXT]jp_s68YpeD.svg.html2015-04-17 19:30 40KJalview SVG summary of results
[ ]jp_s68YpeD.tar.gz2015-04-17 19:30 4.5MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.