JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 17:28 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1nkda_.name2015-04-17 16:40 0 Job name flag file
[ ]jp_cEbIdII.align2015-04-17 17:28 1.7KPSIBLAST alignment in FASTA format
[TXT]jp_cEbIdII.als2015-04-17 17:28 1.5KAlscript command file for PS/PDF output
[ ]jp_cEbIdII.blast.gz2015-04-17 17:28 6.1KCompressed PSIBLAST output file
[TXT]jp_cEbIdII.coils.csv2015-04-17 17:28 384 COILS output in CSV format
[ ]jp_cEbIdII.coilseq.lupas_142015-04-17 17:28 2.5KCOILS output, window length 14
[ ]jp_cEbIdII.coilseq.lupas_212015-04-17 17:28 2.5KCOILS output, window length 21
[ ]jp_cEbIdII.coilseq.lupas_282015-04-17 17:28 2.5KCOILS output, window length 28
[ ]jp_cEbIdII.concise2015-04-17 17:28 5.7KPrediction: coiled-coil, solvent, alignment
[ ]jp_cEbIdII.concise.blc2015-04-17 17:28 2.6KBLC format prediction and alignment data
[ ]jp_cEbIdII.concise.fasta2015-04-17 17:28 2.3KPrediction: coiled-coil, solvent, alignment
[ ]jp_cEbIdII.concise.pdf2015-04-17 17:28 17KPDF prediction and alignment data
[ ]jp_cEbIdII.concise.ps2015-04-17 17:28 287KPrediction: coiled-coil, solvent, alignment
[ ]jp_cEbIdII.fasta2015-04-17 17:23 72 Input query sequence in FASTA format
[ ]jp_cEbIdII.full_MSA.fasta2015-04-17 17:28 4.2KFull MSA before JPred filters in FASTA
[TXT]jp_cEbIdII.full_MSA.fasta.noGaps.html2015-04-17 17:28 10KFull MSA before JPred filters in FASTA
[TXT]jp_cEbIdII.full_MSA.fasta.withGaps.html2015-04-17 17:28 13KFull MSA before JPred filters in FASTA
[ ]jp_cEbIdII.hmm2015-04-17 17:28 11KHHMer2 profile of the alignment
[TXT]jp_cEbIdII.html2015-04-17 17:28 14KHTML prediction and alignment data
[ ]jp_cEbIdII.input2015-04-17 16:40 66 Raw input data for analysis
[ ]jp_cEbIdII.jalview2015-04-17 17:28 2.0KJalview annotation file for alignment
[ ]jp_cEbIdII.jnet2015-04-17 17:28 2.2KJnet secondary structure output
[TXT]jp_cEbIdII.profile2015-04-17 17:26 9.8KPSIBLAST profile from alignment
[ ]jp_cEbIdII.pssm2015-04-17 17:28 13KPSIBLAST PSSM for Jnet
[TXT]jp_cEbIdII.results.html2016-02-15 12:17 34KJPred results page
[TXT]jp_cEbIdII.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_cEbIdII.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_cEbIdII.seq2015-04-17 16:40 72 Sequence data file
[TXT]jp_cEbIdII.simple.html2015-04-17 17:28 1.0KBrief HTML: sequence and prediction only
[TXT]jp_cEbIdII.svg.html2015-04-17 17:28 26KJalview SVG summary of results
[ ]jp_cEbIdII.tar.gz2015-04-17 17:28 46KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.