JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:06 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1nyca_.name2015-04-17 16:40 0 Job name flag file
[ ]jp_3KsxZCV.align2015-04-17 18:06 517 PSIBLAST alignment in FASTA format
[TXT]jp_3KsxZCV.als2015-04-17 18:06 2.3KAlscript command file for PS/PDF output
[ ]jp_3KsxZCV.blast.gz2015-04-17 18:06 2.0KCompressed PSIBLAST output file
[TXT]jp_3KsxZCV.coils.csv2015-04-17 18:06 696 COILS output in CSV format
[ ]jp_3KsxZCV.coilseq.lupas_142015-04-17 18:06 4.7KCOILS output, window length 14
[ ]jp_3KsxZCV.coilseq.lupas_212015-04-17 18:06 4.7KCOILS output, window length 21
[ ]jp_3KsxZCV.coilseq.lupas_282015-04-17 18:06 4.7KCOILS output, window length 28
[ ]jp_3KsxZCV.concise2015-04-17 18:06 5.8KPrediction: coiled-coil, solvent, alignment
[ ]jp_3KsxZCV.concise.blc2015-04-17 18:06 2.2KBLC format prediction and alignment data
[ ]jp_3KsxZCV.concise.fasta2015-04-17 18:06 1.7KPrediction: coiled-coil, solvent, alignment
[ ]jp_3KsxZCV.concise.pdf2015-04-17 18:06 14KPDF prediction and alignment data
[ ]jp_3KsxZCV.concise.ps2015-04-17 18:06 239KPrediction: coiled-coil, solvent, alignment
[ ]jp_3KsxZCV.fasta2015-04-17 17:23 125 Input query sequence in FASTA format
[ ]jp_3KsxZCV.full_MSA.fasta2015-04-17 18:06 777 Full MSA before JPred filters in FASTA
[TXT]jp_3KsxZCV.full_MSA.fasta.noGaps.html2015-04-17 18:06 1.5KFull MSA before JPred filters in FASTA
[TXT]jp_3KsxZCV.full_MSA.fasta.withGaps.html2015-04-17 18:06 1.5KFull MSA before JPred filters in FASTA
[ ]jp_3KsxZCV.hmm2015-04-17 18:06 21KHHMer2 profile of the alignment
[TXT]jp_3KsxZCV.html2015-04-17 18:06 12KHTML prediction and alignment data
[ ]jp_3KsxZCV.input2015-04-17 16:40 118 Raw input data for analysis
[ ]jp_3KsxZCV.jalview2015-04-17 18:06 3.0KJalview annotation file for alignment
[ ]jp_3KsxZCV.jnet2015-04-17 18:06 4.1KJnet secondary structure output
[TXT]jp_3KsxZCV.profile2015-04-17 17:53 18KPSIBLAST profile from alignment
[ ]jp_3KsxZCV.pssm2015-04-17 18:06 24KPSIBLAST PSSM for Jnet
[TXT]jp_3KsxZCV.results.html2016-02-15 12:17 53KJPred results page
[TXT]jp_3KsxZCV.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_3KsxZCV.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_3KsxZCV.seq2015-04-17 16:40 125 Sequence data file
[TXT]jp_3KsxZCV.simple.html2015-04-17 18:06 1.3KBrief HTML: sequence and prediction only
[TXT]jp_3KsxZCV.svg.html2015-04-17 18:06 45KJalview SVG summary of results
[ ]jp_3KsxZCV.tar.gz2015-04-17 18:06 42KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.