JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 19:26 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1o22a_.name2015-04-17 17:53 0 Job name flag file
[ ]jp_rxHqGaB.align2015-04-17 19:26 328 PSIBLAST alignment in FASTA format
[TXT]jp_rxHqGaB.als2015-04-17 19:26 2.7KAlscript command file for PS/PDF output
[ ]jp_rxHqGaB.blast.gz2015-04-17 19:26 1.9KCompressed PSIBLAST output file
[TXT]jp_rxHqGaB.coils.csv2015-04-17 19:26 924 COILS output in CSV format
[ ]jp_rxHqGaB.coilseq.lupas_142015-04-17 19:26 6.3KCOILS output, window length 14
[ ]jp_rxHqGaB.coilseq.lupas_212015-04-17 19:26 6.3KCOILS output, window length 21
[ ]jp_rxHqGaB.coilseq.lupas_282015-04-17 19:26 6.3KCOILS output, window length 28
[ ]jp_rxHqGaB.concise2015-04-17 19:26 7.0KPrediction: coiled-coil, solvent, alignment
[ ]jp_rxHqGaB.concise.blc2015-04-17 19:26 2.6KBLC format prediction and alignment data
[ ]jp_rxHqGaB.concise.fasta2015-04-17 19:26 1.9KPrediction: coiled-coil, solvent, alignment
[ ]jp_rxHqGaB.concise.pdf2015-04-17 19:26 17KPDF prediction and alignment data
[ ]jp_rxHqGaB.concise.ps2015-04-17 19:26 291KPrediction: coiled-coil, solvent, alignment
[ ]jp_rxHqGaB.fasta2015-04-17 19:24 164 Input query sequence in FASTA format
[ ]jp_rxHqGaB.full_MSA.fasta2015-04-17 19:26 666 Full MSA before JPred filters in FASTA
[TXT]jp_rxHqGaB.full_MSA.fasta.noGaps.html2015-04-17 19:26 1.1KFull MSA before JPred filters in FASTA
[TXT]jp_rxHqGaB.full_MSA.fasta.withGaps.html2015-04-17 19:26 1.1KFull MSA before JPred filters in FASTA
[ ]jp_rxHqGaB.hmm2015-04-17 19:26 28KHHMer2 profile of the alignment
[TXT]jp_rxHqGaB.html2015-04-17 19:26 14KHTML prediction and alignment data
[ ]jp_rxHqGaB.input2015-04-17 17:53 156 Raw input data for analysis
[ ]jp_rxHqGaB.jalview2015-04-17 19:26 3.8KJalview annotation file for alignment
[ ]jp_rxHqGaB.jnet2015-04-17 19:26 5.5KJnet secondary structure output
[TXT]jp_rxHqGaB.profile2015-04-17 19:25 24KPSIBLAST profile from alignment
[ ]jp_rxHqGaB.pssm2015-04-17 19:26 32KPSIBLAST PSSM for Jnet
[TXT]jp_rxHqGaB.results.html2016-02-15 12:17 70KJPred results page
[TXT]jp_rxHqGaB.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_rxHqGaB.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_rxHqGaB.seq2015-04-17 17:53 164 Sequence data file
[TXT]jp_rxHqGaB.simple.html2015-04-17 19:26 1.4KBrief HTML: sequence and prediction only
[TXT]jp_rxHqGaB.svg.html2015-04-17 19:26 62KJalview SVG summary of results
[ ]jp_rxHqGaB.tar.gz2015-04-17 19:26 46KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.