JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:28 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1o82a_.name2015-04-17 16:04 0 Job name flag file
[ ]jp_eSlriK4.align2015-04-17 16:27 261 PSIBLAST alignment in FASTA format
[TXT]jp_eSlriK4.als2015-04-17 16:27 1.8KAlscript command file for PS/PDF output
[ ]jp_eSlriK4.blast.gz2015-04-17 16:27 1.8KCompressed PSIBLAST output file
[TXT]jp_eSlriK4.coils.csv2015-04-17 16:27 450 COILS output in CSV format
[ ]jp_eSlriK4.coilseq.lupas_142015-04-17 16:27 2.9KCOILS output, window length 14
[ ]jp_eSlriK4.coilseq.lupas_212015-04-17 16:27 2.9KCOILS output, window length 21
[ ]jp_eSlriK4.coilseq.lupas_282015-04-17 16:27 2.9KCOILS output, window length 28
[ ]jp_eSlriK4.concise2015-04-17 16:27 3.6KPrediction: coiled-coil, solvent, alignment
[ ]jp_eSlriK4.concise.blc2015-04-17 16:27 1.4KBLC format prediction and alignment data
[ ]jp_eSlriK4.concise.fasta2015-04-17 16:27 1.0KPrediction: coiled-coil, solvent, alignment
[ ]jp_eSlriK4.concise.pdf2015-04-17 16:27 11KPDF prediction and alignment data
[ ]jp_eSlriK4.concise.ps2015-04-17 16:27 158KPrediction: coiled-coil, solvent, alignment
[ ]jp_eSlriK4.fasta2015-04-17 16:26 83 Input query sequence in FASTA format
[ ]jp_eSlriK4.full_MSA.fasta2015-04-17 16:27 437 Full MSA before JPred filters in FASTA
[TXT]jp_eSlriK4.full_MSA.fasta.noGaps.html2015-04-17 16:27 1.1KFull MSA before JPred filters in FASTA
[TXT]jp_eSlriK4.full_MSA.fasta.withGaps.html2015-04-17 16:27 1.1KFull MSA before JPred filters in FASTA
[ ]jp_eSlriK4.hmm2015-04-17 16:27 13KHHMer2 profile of the alignment
[TXT]jp_eSlriK4.html2015-04-17 16:27 9.8KHTML prediction and alignment data
[ ]jp_eSlriK4.input2015-04-17 16:04 77 Raw input data for analysis
[ ]jp_eSlriK4.jalview2015-04-17 16:27 2.2KJalview annotation file for alignment
[ ]jp_eSlriK4.jnet2015-04-17 16:27 2.6KJnet secondary structure output
[TXT]jp_eSlriK4.profile2015-04-17 16:27 12KPSIBLAST profile from alignment
[ ]jp_eSlriK4.pssm2015-04-17 16:27 15KPSIBLAST PSSM for Jnet
[TXT]jp_eSlriK4.results.html2016-02-15 12:17 39KJPred results page
[TXT]jp_eSlriK4.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_eSlriK4.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_eSlriK4.seq2015-04-17 16:04 83 Sequence data file
[TXT]jp_eSlriK4.simple.html2015-04-17 16:27 1.1KBrief HTML: sequence and prediction only
[TXT]jp_eSlriK4.svg.html2015-04-17 16:28 31KJalview SVG summary of results
[ ]jp_eSlriK4.tar.gz2015-04-17 16:28 30KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.