JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:34 4.7KJPred server log file
[TXT]README2016-02-15 12:17 2.1KResults file descriptions
[TXT]d1o8ba2.name2015-04-17 19:07 0 Job name flag file
[ ]jp_29x48N2.align2015-04-17 21:34 68KPSIBLAST alignment in FASTA format
[TXT]jp_29x48N2.als2015-04-17 21:34 2.2KAlscript command file for PS/PDF output
[ ]jp_29x48N2.blast.gz2015-04-17 21:34 813KCompressed PSIBLAST output file
[TXT]jp_29x48N2.coils.csv2015-04-17 21:34 462 COILS output in CSV format
[ ]jp_29x48N2.coilseq.lupas_142015-04-17 21:34 3.0KCOILS output, window length 14
[ ]jp_29x48N2.coilseq.lupas_212015-04-17 21:34 3.0KCOILS output, window length 21
[ ]jp_29x48N2.coilseq.lupas_282015-04-17 21:34 3.0KCOILS output, window length 28
[ ]jp_29x48N2.concise2015-04-17 21:34 130KPrediction: coiled-coil, solvent, alignment
[ ]jp_29x48N2.concise.blc2015-04-17 21:34 68KBLC format prediction and alignment data
[ ]jp_29x48N2.concise.fasta2015-04-17 21:34 69KPrediction: coiled-coil, solvent, alignment
[ ]jp_29x48N2.concise.pdf2015-04-17 21:34 457KPDF prediction and alignment data
[ ]jp_29x48N2.concise.ps2015-04-17 21:34 7.5MPrediction: coiled-coil, solvent, alignment
[ ]jp_29x48N2.fasta2015-04-17 21:27 86 Input query sequence in FASTA format
[ ]jp_29x48N2.full_MSA.fasta2015-04-17 21:34 1.5MFull MSA before JPred filters in FASTA
[TXT]jp_29x48N2.full_MSA.fasta.noGaps.html2015-04-17 21:34 479KFull MSA before JPred filters in FASTA
[TXT]jp_29x48N2.full_MSA.fasta.withGaps.html2015-04-17 21:34 4.2MFull MSA before JPred filters in FASTA
[ ]jp_29x48N2.hmm2015-04-17 21:34 14KHHMer2 profile of the alignment
[TXT]jp_29x48N2.html2015-04-17 21:34 222KHTML prediction and alignment data
[ ]jp_29x48N2.input2015-04-17 19:07 79 Raw input data for analysis
[ ]jp_29x48N2.jalview2015-04-17 21:34 2.3KJalview annotation file for alignment
[ ]jp_29x48N2.jnet2015-04-17 21:34 2.7KJnet secondary structure output
[TXT]jp_29x48N2.profile2015-04-17 21:31 12KPSIBLAST profile from alignment
[ ]jp_29x48N2.pssm2015-04-17 21:34 15KPSIBLAST PSSM for Jnet
[TXT]jp_29x48N2.results.html2016-02-15 12:17 40KJPred results page
[TXT]jp_29x48N2.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_29x48N2.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_29x48N2.seq2015-04-17 19:07 86 Sequence data file
[TXT]jp_29x48N2.simple.html2015-04-17 21:34 1.2KBrief HTML: sequence and prediction only
[TXT]jp_29x48N2.svg.html2015-04-17 21:34 32KJalview SVG summary of results
[ ]jp_29x48N2.tar.gz2015-04-17 21:34 1.8MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.