JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:31 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1on2a2.name2015-04-17 15:26 0 Job name flag file
[ ]jp_o3odCrY.align2015-04-17 15:31 92KPSIBLAST alignment in FASTA format
[TXT]jp_o3odCrY.als2015-04-17 15:31 1.8KAlscript command file for PS/PDF output
[ ]jp_o3odCrY.blast.gz2015-04-17 15:30 313KCompressed PSIBLAST output file
[TXT]jp_o3odCrY.coils.csv2015-04-17 15:31 474 COILS output in CSV format
[ ]jp_o3odCrY.coilseq.lupas_142015-04-17 15:31 3.1KCOILS output, window length 14
[ ]jp_o3odCrY.coilseq.lupas_212015-04-17 15:31 3.1KCOILS output, window length 21
[ ]jp_o3odCrY.coilseq.lupas_282015-04-17 15:31 3.1KCOILS output, window length 28
[ ]jp_o3odCrY.concise2015-04-17 15:31 174KPrediction: coiled-coil, solvent, alignment
[ ]jp_o3odCrY.concise.blc2015-04-17 15:31 91KBLC format prediction and alignment data
[ ]jp_o3odCrY.concise.fasta2015-04-17 15:31 93KPrediction: coiled-coil, solvent, alignment
[ ]jp_o3odCrY.concise.pdf2015-04-17 15:31 535KPDF prediction and alignment data
[ ]jp_o3odCrY.concise.ps2015-04-17 15:31 9.6MPrediction: coiled-coil, solvent, alignment
[ ]jp_o3odCrY.fasta2015-04-17 15:26 88 Input query sequence in FASTA format
[ ]jp_o3odCrY.full_MSA.fasta2015-04-17 15:30 515KFull MSA before JPred filters in FASTA
[TXT]jp_o3odCrY.full_MSA.fasta.noGaps.html2015-04-17 15:31 579KFull MSA before JPred filters in FASTA
[TXT]jp_o3odCrY.full_MSA.fasta.withGaps.html2015-04-17 15:31 3.0MFull MSA before JPred filters in FASTA
[ ]jp_o3odCrY.hmm2015-04-17 15:31 14KHHMer2 profile of the alignment
[TXT]jp_o3odCrY.html2015-04-17 15:31 293KHTML prediction and alignment data
[ ]jp_o3odCrY.input2015-04-17 15:26 81 Raw input data for analysis
[ ]jp_o3odCrY.jalview2015-04-17 15:31 2.4KJalview annotation file for alignment
[ ]jp_o3odCrY.jnet2015-04-17 15:31 2.8KJnet secondary structure output
[TXT]jp_o3odCrY.profile2015-04-17 15:29 12KPSIBLAST profile from alignment
[ ]jp_o3odCrY.pssm2015-04-17 15:31 16KPSIBLAST PSSM for Jnet
[TXT]jp_o3odCrY.results.html2016-02-15 12:18 40KJPred results page
[TXT]jp_o3odCrY.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_o3odCrY.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_o3odCrY.seq2015-04-17 15:26 88 Sequence data file
[TXT]jp_o3odCrY.simple.html2015-04-17 15:31 1.1KBrief HTML: sequence and prediction only
[TXT]jp_o3odCrY.svg.html2015-04-17 15:31 32KJalview SVG summary of results
[ ]jp_o3odCrY.tar.gz2015-04-17 15:31 1.3MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.