JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 20:32 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1oqja_.name2015-04-17 17:53 0 Job name flag file
[ ]jp_hSwoTm_.align2015-04-17 20:31 38KPSIBLAST alignment in FASTA format
[TXT]jp_hSwoTm_.als2015-04-17 20:31 2.5KAlscript command file for PS/PDF output
[ ]jp_hSwoTm_.blast.gz2015-04-17 20:31 289KCompressed PSIBLAST output file
[TXT]jp_hSwoTm_.coils.csv2015-04-17 20:31 570 COILS output in CSV format
[ ]jp_hSwoTm_.coilseq.lupas_142015-04-17 20:31 3.8KCOILS output, window length 14
[ ]jp_hSwoTm_.coilseq.lupas_212015-04-17 20:31 3.8KCOILS output, window length 21
[ ]jp_hSwoTm_.coilseq.lupas_282015-04-17 20:31 3.8KCOILS output, window length 28
[ ]jp_hSwoTm_.concise2015-04-17 20:31 75KPrediction: coiled-coil, solvent, alignment
[ ]jp_hSwoTm_.concise.blc2015-04-17 20:31 39KBLC format prediction and alignment data
[ ]jp_hSwoTm_.concise.fasta2015-04-17 20:31 39KPrediction: coiled-coil, solvent, alignment
[ ]jp_hSwoTm_.concise.pdf2015-04-17 20:31 216KPDF prediction and alignment data
[ ]jp_hSwoTm_.concise.ps2015-04-17 20:31 4.1MPrediction: coiled-coil, solvent, alignment
[ ]jp_hSwoTm_.fasta2015-04-17 19:24 104 Input query sequence in FASTA format
[ ]jp_hSwoTm_.full_MSA.fasta2015-04-17 20:31 708KFull MSA before JPred filters in FASTA
[TXT]jp_hSwoTm_.full_MSA.fasta.noGaps.html2015-04-17 20:31 188KFull MSA before JPred filters in FASTA
[TXT]jp_hSwoTm_.full_MSA.fasta.withGaps.html2015-04-17 20:31 1.9MFull MSA before JPred filters in FASTA
[ ]jp_hSwoTm_.hmm2015-04-17 20:31 17KHHMer2 profile of the alignment
[TXT]jp_hSwoTm_.html2015-04-17 20:31 112KHTML prediction and alignment data
[ ]jp_hSwoTm_.input2015-04-17 17:53 97 Raw input data for analysis
[ ]jp_hSwoTm_.jalview2015-04-17 20:31 2.6KJalview annotation file for alignment
[ ]jp_hSwoTm_.jnet2015-04-17 20:31 3.4KJnet secondary structure output
[TXT]jp_hSwoTm_.profile2015-04-17 20:18 15KPSIBLAST profile from alignment
[ ]jp_hSwoTm_.pssm2015-04-17 20:31 19KPSIBLAST PSSM for Jnet
[TXT]jp_hSwoTm_.results.html2016-02-15 12:18 47KJPred results page
[TXT]jp_hSwoTm_.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_hSwoTm_.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_hSwoTm_.seq2015-04-17 17:53 104 Sequence data file
[TXT]jp_hSwoTm_.simple.html2015-04-17 20:31 1.3KBrief HTML: sequence and prediction only
[TXT]jp_hSwoTm_.svg.html2015-04-17 20:31 39KJalview SVG summary of results
[ ]jp_hSwoTm_.tar.gz2015-04-17 20:32 710KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.