JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

Home
REST API
About
F.A.Q.
Help & Tutorials
Monitoring
Contact
Publications
 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:44 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1p35a_.name2015-04-17 16:12 0 Job name flag file
[ ]jp_ASndvz9.align2015-04-17 16:44 4.7KPSIBLAST alignment in FASTA format
[TXT]jp_ASndvz9.als2015-04-17 16:44 4.7KAlscript command file for PS/PDF output
[ ]jp_ASndvz9.blast.gz2015-04-17 16:44 9.8KCompressed PSIBLAST output file
[TXT]jp_ASndvz9.coils.csv2015-04-17 16:44 1.8KCOILS output in CSV format
[ ]jp_ASndvz9.coilseq.lupas_142015-04-17 16:44 13KCOILS output, window length 14
[ ]jp_ASndvz9.coilseq.lupas_212015-04-17 16:44 13KCOILS output, window length 21
[ ]jp_ASndvz9.coilseq.lupas_282015-04-17 16:44 13KCOILS output, window length 28
[ ]jp_ASndvz9.concise2015-04-17 16:44 22KPrediction: coiled-coil, solvent, alignment
[ ]jp_ASndvz9.concise.blc2015-04-17 16:44 9.1KBLC format prediction and alignment data
[ ]jp_ASndvz9.concise.fasta2015-04-17 16:44 7.8KPrediction: coiled-coil, solvent, alignment
[ ]jp_ASndvz9.concise.pdf2015-04-17 16:44 62KPDF prediction and alignment data
[ ]jp_ASndvz9.concise.ps2015-04-17 16:44 1.1MPrediction: coiled-coil, solvent, alignment
[ ]jp_ASndvz9.fasta2015-04-17 16:38 316 Input query sequence in FASTA format
[ ]jp_ASndvz9.full_MSA.fasta2015-04-17 16:44 8.6KFull MSA before JPred filters in FASTA
[TXT]jp_ASndvz9.full_MSA.fasta.noGaps.html2015-04-17 16:44 8.7KFull MSA before JPred filters in FASTA
[TXT]jp_ASndvz9.full_MSA.fasta.withGaps.html2015-04-17 16:44 28KFull MSA before JPred filters in FASTA
[ ]jp_ASndvz9.hmm2015-04-17 16:44 56KHHMer2 profile of the alignment
[TXT]jp_ASndvz9.html2015-04-17 16:44 34KHTML prediction and alignment data
[ ]jp_ASndvz9.input2015-04-17 16:12 306 Raw input data for analysis
[ ]jp_ASndvz9.jalview2015-04-17 16:44 6.8KJalview annotation file for alignment
[ ]jp_ASndvz9.jnet2015-04-17 16:44 11KJnet secondary structure output
[TXT]jp_ASndvz9.profile2015-04-17 16:41 48KPSIBLAST profile from alignment
[ ]jp_ASndvz9.pssm2015-04-17 16:44 64KPSIBLAST PSSM for Jnet
[TXT]jp_ASndvz9.results.html2016-02-15 12:18 131KJPred results page
[TXT]jp_ASndvz9.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_ASndvz9.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_ASndvz9.seq2015-04-17 16:12 316 Sequence data file
[TXT]jp_ASndvz9.simple.html2015-04-17 16:44 2.1KBrief HTML: sequence and prediction only
[TXT]jp_ASndvz9.svg.html2015-04-17 16:44 123KJalview SVG summary of results
[ ]jp_ASndvz9.tar.gz2015-04-17 16:44 151KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.