JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:46 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1p5dx4.name2015-04-17 16:14 0 Job name flag file
[ ]jp_T2IHC9T.align2015-04-17 16:45 89KPSIBLAST alignment in FASTA format
[TXT]jp_T2IHC9T.als2015-04-17 16:45 2.1KAlscript command file for PS/PDF output
[ ]jp_T2IHC9T.blast.gz2015-04-17 16:45 1.6MCompressed PSIBLAST output file
[TXT]jp_T2IHC9T.coils.csv2015-04-17 16:45 606 COILS output in CSV format
[ ]jp_T2IHC9T.coilseq.lupas_142015-04-17 16:45 4.0KCOILS output, window length 14
[ ]jp_T2IHC9T.coilseq.lupas_212015-04-17 16:45 4.0KCOILS output, window length 21
[ ]jp_T2IHC9T.coilseq.lupas_282015-04-17 16:45 4.0KCOILS output, window length 28
[ ]jp_T2IHC9T.concise2015-04-17 16:45 172KPrediction: coiled-coil, solvent, alignment
[ ]jp_T2IHC9T.concise.blc2015-04-17 16:45 89KBLC format prediction and alignment data
[ ]jp_T2IHC9T.concise.fasta2015-04-17 16:45 90KPrediction: coiled-coil, solvent, alignment
[ ]jp_T2IHC9T.concise.pdf2015-04-17 16:45 538KPDF prediction and alignment data
[ ]jp_T2IHC9T.concise.ps2015-04-17 16:45 9.8MPrediction: coiled-coil, solvent, alignment
[ ]jp_T2IHC9T.fasta2015-04-17 16:40 110 Input query sequence in FASTA format
[ ]jp_T2IHC9T.full_MSA.fasta2015-04-17 16:45 4.2MFull MSA before JPred filters in FASTA
[TXT]jp_T2IHC9T.full_MSA.fasta.noGaps.html2015-04-17 16:45 1.3MFull MSA before JPred filters in FASTA
[TXT]jp_T2IHC9T.full_MSA.fasta.withGaps.html2015-04-17 16:45 16MFull MSA before JPred filters in FASTA
[ ]jp_T2IHC9T.hmm2015-04-17 16:45 18KHHMer2 profile of the alignment
[TXT]jp_T2IHC9T.html2015-04-17 16:45 250KHTML prediction and alignment data
[ ]jp_T2IHC9T.input2015-04-17 16:14 103 Raw input data for analysis
[ ]jp_T2IHC9T.jalview2015-04-17 16:45 2.8KJalview annotation file for alignment
[ ]jp_T2IHC9T.jnet2015-04-17 16:45 3.6KJnet secondary structure output
[TXT]jp_T2IHC9T.profile2015-04-17 16:43 16KPSIBLAST profile from alignment
[ ]jp_T2IHC9T.pssm2015-04-17 16:45 21KPSIBLAST PSSM for Jnet
[TXT]jp_T2IHC9T.results.html2016-02-15 12:18 48KJPred results page
[TXT]jp_T2IHC9T.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_T2IHC9T.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_T2IHC9T.seq2015-04-17 16:14 110 Sequence data file
[TXT]jp_T2IHC9T.simple.html2015-04-17 16:45 1.2KBrief HTML: sequence and prediction only
[TXT]jp_T2IHC9T.svg.html2015-04-17 16:46 40KJalview SVG summary of results
[ ]jp_T2IHC9T.tar.gz2015-04-17 16:46 3.8MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.