JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 21:34 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1p90a_.name2015-04-17 19:08 0 Job name flag file
[ ]jp_1YxnbGn.align2015-04-17 21:34 138KPSIBLAST alignment in FASTA format
[TXT]jp_1YxnbGn.als2015-04-17 21:34 2.8KAlscript command file for PS/PDF output
[ ]jp_1YxnbGn.blast.gz2015-04-17 21:33 895KCompressed PSIBLAST output file
[TXT]jp_1YxnbGn.coils.csv2015-04-17 21:34 768 COILS output in CSV format
[ ]jp_1YxnbGn.coilseq.lupas_142015-04-17 21:34 5.2KCOILS output, window length 14
[ ]jp_1YxnbGn.coilseq.lupas_212015-04-17 21:34 5.2KCOILS output, window length 21
[ ]jp_1YxnbGn.coilseq.lupas_282015-04-17 21:34 5.2KCOILS output, window length 28
[ ]jp_1YxnbGn.concise2015-04-17 21:34 269KPrediction: coiled-coil, solvent, alignment
[ ]jp_1YxnbGn.concise.blc2015-04-17 21:34 138KBLC format prediction and alignment data
[ ]jp_1YxnbGn.concise.fasta2015-04-17 21:34 140KPrediction: coiled-coil, solvent, alignment
[ ]jp_1YxnbGn.concise.pdf2015-04-17 21:34 896KPDF prediction and alignment data
[ ]jp_1YxnbGn.concise.ps2015-04-17 21:34 16MPrediction: coiled-coil, solvent, alignment
[ ]jp_1YxnbGn.fasta2015-04-17 21:29 137 Input query sequence in FASTA format
[ ]jp_1YxnbGn.full_MSA.fasta2015-04-17 21:33 2.3MFull MSA before JPred filters in FASTA
[TXT]jp_1YxnbGn.full_MSA.fasta.noGaps.html2015-04-17 21:34 577KFull MSA before JPred filters in FASTA
[TXT]jp_1YxnbGn.full_MSA.fasta.withGaps.html2015-04-17 21:34 7.6MFull MSA before JPred filters in FASTA
[ ]jp_1YxnbGn.hmm2015-04-17 21:34 23KHHMer2 profile of the alignment
[TXT]jp_1YxnbGn.html2015-04-17 21:34 341KHTML prediction and alignment data
[ ]jp_1YxnbGn.input2015-04-17 19:08 130 Raw input data for analysis
[ ]jp_1YxnbGn.jalview2015-04-17 21:34 3.3KJalview annotation file for alignment
[ ]jp_1YxnbGn.jnet2015-04-17 21:34 4.6KJnet secondary structure output
[TXT]jp_1YxnbGn.profile2015-04-17 21:32 20KPSIBLAST profile from alignment
[ ]jp_1YxnbGn.pssm2015-04-17 21:34 26KPSIBLAST PSSM for Jnet
[TXT]jp_1YxnbGn.results.html2016-02-15 12:18 60KJPred results page
[TXT]jp_1YxnbGn.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_1YxnbGn.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_1YxnbGn.seq2015-04-17 19:08 137 Sequence data file
[TXT]jp_1YxnbGn.simple.html2015-04-17 21:34 1.4KBrief HTML: sequence and prediction only
[TXT]jp_1YxnbGn.svg.html2015-04-17 21:34 52KJalview SVG summary of results
[ ]jp_1YxnbGn.tar.gz2015-04-17 21:34 2.7MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.