JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 16:44 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1pbya5.name2015-04-17 16:16 0 Job name flag file
[ ]jp_mnTJpX0.align2015-04-17 16:44 7.2KPSIBLAST alignment in FASTA format
[TXT]jp_mnTJpX0.als2015-04-17 16:44 2.4KAlscript command file for PS/PDF output
[ ]jp_mnTJpX0.blast.gz2015-04-17 16:44 20KCompressed PSIBLAST output file
[TXT]jp_mnTJpX0.coils.csv2015-04-17 16:44 678 COILS output in CSV format
[ ]jp_mnTJpX0.coilseq.lupas_142015-04-17 16:44 4.5KCOILS output, window length 14
[ ]jp_mnTJpX0.coilseq.lupas_212015-04-17 16:44 4.5KCOILS output, window length 21
[ ]jp_mnTJpX0.coilseq.lupas_282015-04-17 16:44 4.5KCOILS output, window length 28
[ ]jp_mnTJpX0.concise2015-04-17 16:44 18KPrediction: coiled-coil, solvent, alignment
[ ]jp_mnTJpX0.concise.blc2015-04-17 16:44 8.8KBLC format prediction and alignment data
[ ]jp_mnTJpX0.concise.fasta2015-04-17 16:44 8.4KPrediction: coiled-coil, solvent, alignment
[ ]jp_mnTJpX0.concise.pdf2015-04-17 16:44 52KPDF prediction and alignment data
[ ]jp_mnTJpX0.concise.ps2015-04-17 16:44 1.0MPrediction: coiled-coil, solvent, alignment
[ ]jp_mnTJpX0.fasta2015-04-17 16:42 122 Input query sequence in FASTA format
[ ]jp_mnTJpX0.full_MSA.fasta2015-04-17 16:44 18KFull MSA before JPred filters in FASTA
[TXT]jp_mnTJpX0.full_MSA.fasta.noGaps.html2015-04-17 16:44 19KFull MSA before JPred filters in FASTA
[TXT]jp_mnTJpX0.full_MSA.fasta.withGaps.html2015-04-17 16:44 92KFull MSA before JPred filters in FASTA
[ ]jp_mnTJpX0.hmm2015-04-17 16:44 20KHHMer2 profile of the alignment
[TXT]jp_mnTJpX0.html2015-04-17 16:44 30KHTML prediction and alignment data
[ ]jp_mnTJpX0.input2015-04-17 16:16 115 Raw input data for analysis
[ ]jp_mnTJpX0.jalview2015-04-17 16:44 3.0KJalview annotation file for alignment
[ ]jp_mnTJpX0.jnet2015-04-17 16:44 4.0KJnet secondary structure output
[TXT]jp_mnTJpX0.profile2015-04-17 16:44 18KPSIBLAST profile from alignment
[ ]jp_mnTJpX0.pssm2015-04-17 16:44 23KPSIBLAST PSSM for Jnet
[TXT]jp_mnTJpX0.results.html2016-02-15 12:18 52KJPred results page
[TXT]jp_mnTJpX0.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_mnTJpX0.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_mnTJpX0.seq2015-04-17 16:16 122 Sequence data file
[TXT]jp_mnTJpX0.simple.html2015-04-17 16:44 1.3KBrief HTML: sequence and prediction only
[TXT]jp_mnTJpX0.svg.html2015-04-17 16:44 44KJalview SVG summary of results
[ ]jp_mnTJpX0.tar.gz2015-04-17 16:44 125KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.