JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 15:33 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1pbyc_.name2015-04-17 15:27 0 Job name flag file
[ ]jp_qG3DiWL.align2015-04-17 15:33 2.8KPSIBLAST alignment in FASTA format
[TXT]jp_qG3DiWL.als2015-04-17 15:33 1.7KAlscript command file for PS/PDF output
[ ]jp_qG3DiWL.blast.gz2015-04-17 15:33 8.8KCompressed PSIBLAST output file
[TXT]jp_qG3DiWL.coils.csv2015-04-17 15:33 504 COILS output in CSV format
[ ]jp_qG3DiWL.coilseq.lupas_142015-04-17 15:33 3.3KCOILS output, window length 14
[ ]jp_qG3DiWL.coilseq.lupas_212015-04-17 15:33 3.3KCOILS output, window length 21
[ ]jp_qG3DiWL.coilseq.lupas_282015-04-17 15:33 3.3KCOILS output, window length 28
[ ]jp_qG3DiWL.concise2015-04-17 15:33 8.7KPrediction: coiled-coil, solvent, alignment
[ ]jp_qG3DiWL.concise.blc2015-04-17 15:33 4.0KBLC format prediction and alignment data
[ ]jp_qG3DiWL.concise.fasta2015-04-17 15:33 3.7KPrediction: coiled-coil, solvent, alignment
[ ]jp_qG3DiWL.concise.pdf2015-04-17 15:33 24KPDF prediction and alignment data
[ ]jp_qG3DiWL.concise.ps2015-04-17 15:33 417KPrediction: coiled-coil, solvent, alignment
[ ]jp_qG3DiWL.fasta2015-04-17 15:28 93 Input query sequence in FASTA format
[ ]jp_qG3DiWL.full_MSA.fasta2015-04-17 15:33 10KFull MSA before JPred filters in FASTA
[TXT]jp_qG3DiWL.full_MSA.fasta.noGaps.html2015-04-17 15:33 13KFull MSA before JPred filters in FASTA
[TXT]jp_qG3DiWL.full_MSA.fasta.withGaps.html2015-04-17 15:33 43KFull MSA before JPred filters in FASTA
[ ]jp_qG3DiWL.hmm2015-04-17 15:33 15KHHMer2 profile of the alignment
[TXT]jp_qG3DiWL.html2015-04-17 15:33 15KHTML prediction and alignment data
[ ]jp_qG3DiWL.input2015-04-17 15:27 86 Raw input data for analysis
[ ]jp_qG3DiWL.jalview2015-04-17 15:33 2.3KJalview annotation file for alignment
[ ]jp_qG3DiWL.jnet2015-04-17 15:33 3.0KJnet secondary structure output
[TXT]jp_qG3DiWL.profile2015-04-17 15:31 13KPSIBLAST profile from alignment
[ ]jp_qG3DiWL.pssm2015-04-17 15:33 17KPSIBLAST PSSM for Jnet
[TXT]jp_qG3DiWL.results.html2016-02-15 12:18 41KJPred results page
[TXT]jp_qG3DiWL.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_qG3DiWL.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_qG3DiWL.seq2015-04-17 15:27 93 Sequence data file
[TXT]jp_qG3DiWL.simple.html2015-04-17 15:33 1.1KBrief HTML: sequence and prediction only
[TXT]jp_qG3DiWL.svg.html2015-04-17 15:33 33KJalview SVG summary of results
[ ]jp_qG3DiWL.tar.gz2015-04-17 15:33 67KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.