JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:28 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1pfoa_.name2015-04-17 17:17 0 Job name flag file
[ ]jp_s9CpazD.align2015-04-17 18:28 73KPSIBLAST alignment in FASTA format
[TXT]jp_s9CpazD.als2015-04-17 18:28 5.9KAlscript command file for PS/PDF output
[ ]jp_s9CpazD.blast.gz2015-04-17 18:27 229KCompressed PSIBLAST output file
[TXT]jp_s9CpazD.coils.csv2015-04-17 18:28 2.8KCOILS output in CSV format
[ ]jp_s9CpazD.coilseq.lupas_142015-04-17 18:28 20KCOILS output, window length 14
[ ]jp_s9CpazD.coilseq.lupas_212015-04-17 18:28 20KCOILS output, window length 21
[ ]jp_s9CpazD.coilseq.lupas_282015-04-17 18:28 20KCOILS output, window length 28
[ ]jp_s9CpazD.concise2015-04-17 18:28 163KPrediction: coiled-coil, solvent, alignment
[ ]jp_s9CpazD.concise.blc2015-04-17 18:28 79KBLC format prediction and alignment data
[ ]jp_s9CpazD.concise.fasta2015-04-17 18:28 78KPrediction: coiled-coil, solvent, alignment
[ ]jp_s9CpazD.concise.pdf2015-04-17 18:28 502KPDF prediction and alignment data
[ ]jp_s9CpazD.concise.ps2015-04-17 18:28 9.6MPrediction: coiled-coil, solvent, alignment
[ ]jp_s9CpazD.fasta2015-04-17 18:24 490 Input query sequence in FASTA format
[ ]jp_s9CpazD.full_MSA.fasta2015-04-17 18:27 361KFull MSA before JPred filters in FASTA
[TXT]jp_s9CpazD.full_MSA.fasta.noGaps.html2015-04-17 18:28 154KFull MSA before JPred filters in FASTA
[TXT]jp_s9CpazD.full_MSA.fasta.withGaps.html2015-04-17 18:28 1.8MFull MSA before JPred filters in FASTA
[ ]jp_s9CpazD.hmm2015-04-17 18:28 88KHHMer2 profile of the alignment
[TXT]jp_s9CpazD.html2015-04-17 18:28 141KHTML prediction and alignment data
[ ]jp_s9CpazD.input2015-04-17 17:17 478 Raw input data for analysis
[ ]jp_s9CpazD.jalview2015-04-17 18:28 10KJalview annotation file for alignment
[ ]jp_s9CpazD.jnet2015-04-17 18:28 17KJnet secondary structure output
[TXT]jp_s9CpazD.profile2015-04-17 18:26 75KPSIBLAST profile from alignment
[ ]jp_s9CpazD.pssm2015-04-17 18:28 101KPSIBLAST PSSM for Jnet
[TXT]jp_s9CpazD.results.html2016-02-15 12:18 192KJPred results page
[TXT]jp_s9CpazD.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_s9CpazD.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_s9CpazD.seq2015-04-17 17:17 490 Sequence data file
[TXT]jp_s9CpazD.simple.html2015-04-17 18:28 2.5KBrief HTML: sequence and prediction only
[TXT]jp_s9CpazD.svg.html2015-04-17 18:28 184KJalview SVG summary of results
[ ]jp_s9CpazD.tar.gz2015-04-17 18:28 1.1MArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.