JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 18:27 4.8KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1pm4a_.name2015-04-17 17:18 0 Job name flag file
[ ]jp_QzxzLfC.align2015-04-17 18:27 398 PSIBLAST alignment in FASTA format
[TXT]jp_QzxzLfC.als2015-04-17 18:27 2.3KAlscript command file for PS/PDF output
[ ]jp_QzxzLfC.blast.gz2015-04-17 18:27 1.7KCompressed PSIBLAST output file
[TXT]jp_QzxzLfC.coils.csv2015-04-17 18:27 732 COILS output in CSV format
[ ]jp_QzxzLfC.coilseq.lupas_142015-04-17 18:27 4.9KCOILS output, window length 14
[ ]jp_QzxzLfC.coilseq.lupas_212015-04-17 18:27 4.9KCOILS output, window length 21
[ ]jp_QzxzLfC.coilseq.lupas_282015-04-17 18:27 4.9KCOILS output, window length 28
[ ]jp_QzxzLfC.concise2015-04-17 18:27 5.8KPrediction: coiled-coil, solvent, alignment
[ ]jp_QzxzLfC.concise.blc2015-04-17 18:27 2.2KBLC format prediction and alignment data
[ ]jp_QzxzLfC.concise.fasta2015-04-17 18:27 1.6KPrediction: coiled-coil, solvent, alignment
[ ]jp_QzxzLfC.concise.pdf2015-04-17 18:27 12KPDF prediction and alignment data
[ ]jp_QzxzLfC.concise.ps2015-04-17 18:27 224KPrediction: coiled-coil, solvent, alignment
[ ]jp_QzxzLfC.fasta2015-04-17 18:25 131 Input query sequence in FASTA format
[ ]jp_QzxzLfC.full_MSA.fasta2015-04-17 18:27 401 Full MSA before JPred filters in FASTA
[TXT]jp_QzxzLfC.full_MSA.fasta.noGaps.html2015-04-17 18:27 782 Full MSA before JPred filters in FASTA
[TXT]jp_QzxzLfC.full_MSA.fasta.withGaps.html2015-04-17 18:27 834 Full MSA before JPred filters in FASTA
[ ]jp_QzxzLfC.hmm2015-04-17 18:27 22KHHMer2 profile of the alignment
[TXT]jp_QzxzLfC.html2015-04-17 18:27 11KHTML prediction and alignment data
[ ]jp_QzxzLfC.input2015-04-17 17:18 124 Raw input data for analysis
[ ]jp_QzxzLfC.jalview2015-04-17 18:27 3.1KJalview annotation file for alignment
[ ]jp_QzxzLfC.jnet2015-04-17 18:27 4.3KJnet secondary structure output
[TXT]jp_QzxzLfC.profile2015-04-17 18:26 19KPSIBLAST profile from alignment
[ ]jp_QzxzLfC.pssm2015-04-17 18:27 25KPSIBLAST PSSM for Jnet
[TXT]jp_QzxzLfC.results.html2016-02-15 12:18 56KJPred results page
[TXT]jp_QzxzLfC.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_QzxzLfC.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_QzxzLfC.seq2015-04-17 17:18 131 Sequence data file
[TXT]jp_QzxzLfC.simple.html2015-04-17 18:27 1.3KBrief HTML: sequence and prediction only
[TXT]jp_QzxzLfC.svg.html2015-04-17 18:27 48KJalview SVG summary of results
[ ]jp_QzxzLfC.tar.gz2015-04-17 18:27 36KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.