JPred: A Protein Secondary Structure Prediction Server

A Protein Secondary Structure Prediction Server

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 NameLast modifiedSizeDescription
[TXT]LOG2015-04-17 22:19 4.7KJPred server log file
[TXT]README2016-02-15 12:18 2.1KResults file descriptions
[TXT]d1ppjh_.name2015-04-17 19:08 0 Job name flag file
[ ]jp_MswLzk4.align2015-04-17 22:18 20KPSIBLAST alignment in FASTA format
[TXT]jp_MswLzk4.als2015-04-17 22:18 1.7KAlscript command file for PS/PDF output
[ ]jp_MswLzk4.blast.gz2015-04-17 22:18 106KCompressed PSIBLAST output file
[TXT]jp_MswLzk4.coils.csv2015-04-17 22:18 426 COILS output in CSV format
[ ]jp_MswLzk4.coilseq.lupas_142015-04-17 22:18 2.8KCOILS output, window length 14
[ ]jp_MswLzk4.coilseq.lupas_212015-04-17 22:18 2.8KCOILS output, window length 21
[ ]jp_MswLzk4.coilseq.lupas_282015-04-17 22:18 2.8KCOILS output, window length 28
[ ]jp_MswLzk4.concise2015-04-17 22:18 41KPrediction: coiled-coil, solvent, alignment
[ ]jp_MswLzk4.concise.blc2015-04-17 22:18 21KBLC format prediction and alignment data
[ ]jp_MswLzk4.concise.fasta2015-04-17 22:18 21KPrediction: coiled-coil, solvent, alignment
[ ]jp_MswLzk4.concise.pdf2015-04-17 22:19 124KPDF prediction and alignment data
[ ]jp_MswLzk4.concise.ps2015-04-17 22:18 2.2MPrediction: coiled-coil, solvent, alignment
[ ]jp_MswLzk4.fasta2015-04-17 21:29 79 Input query sequence in FASTA format
[ ]jp_MswLzk4.full_MSA.fasta2015-04-17 22:18 159KFull MSA before JPred filters in FASTA
[TXT]jp_MswLzk4.full_MSA.fasta.noGaps.html2015-04-17 22:19 95KFull MSA before JPred filters in FASTA
[TXT]jp_MswLzk4.full_MSA.fasta.withGaps.html2015-04-17 22:19 505KFull MSA before JPred filters in FASTA
[ ]jp_MswLzk4.hmm2015-04-17 22:18 12KHHMer2 profile of the alignment
[TXT]jp_MswLzk4.html2015-04-17 22:18 77KHTML prediction and alignment data
[ ]jp_MswLzk4.input2015-04-17 19:08 73 Raw input data for analysis
[ ]jp_MswLzk4.jalview2015-04-17 22:18 2.2KJalview annotation file for alignment
[ ]jp_MswLzk4.jnet2015-04-17 22:18 2.5KJnet secondary structure output
[TXT]jp_MswLzk4.profile2015-04-17 22:00 11KPSIBLAST profile from alignment
[ ]jp_MswLzk4.pssm2015-04-17 22:18 14KPSIBLAST PSSM for Jnet
[TXT]jp_MswLzk4.results.html2016-02-15 12:18 37KJPred results page
[TXT]jp_MswLzk4.results_jalview.html2016-02-24 17:17 13KJalview results options
[TXT]jp_MswLzk4.results_jalview_app.html2016-02-24 17:17 16KHTML prediction and alignment data
[ ]jp_MswLzk4.seq2015-04-17 19:08 79 Sequence data file
[TXT]jp_MswLzk4.simple.html2015-04-17 22:18 1.0KBrief HTML: sequence and prediction only
[TXT]jp_MswLzk4.svg.html2015-04-17 22:19 29KJalview SVG summary of results
[ ]jp_MswLzk4.tar.gz2015-04-17 22:19 332KArchive containing complete results
Primary citation: Drozdetskiy A, Cole C, Procter J & Barton GJ. Nucl. Acids Res.
(first published online April 16, 2015) doi: 10.1093/nar/gkv332 [link]
More citations: link.
.